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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7651 O_BomoIG13123_complete:A_BomoIG_DN31344_c0_g1_i11
169bp
7652 O_BomoIG13124_complete:A_BomoIG_DN31344_c0_g1_i11
160bp
7653 O_BomoIG13125_complete:A_BomoIG_DN31344_c0_g1_i11
107bp
7654 O_BomoIG13126_complete:A_BomoIG_DN31344_c0_g1_i11
106bp
7655 O_BomoIG13127_complete:A_BomoIG_DN31344_c0_g1_i12
2037bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
7656 O_BomoIG13128_complete:A_BomoIG_DN31344_c0_g1_i12
206bp
7657 O_BomoIG13129_complete:A_BomoIG_DN31344_c0_g1_i12
169bp
7658 O_BomoIG1312_complete:A_BomoIG_DN30202_c7_g3_i6
123bp
7659 O_BomoIG13130_complete:A_BomoIG_DN31344_c0_g1_i12
160bp
7660 O_BomoIG13131_complete:A_BomoIG_DN31344_c0_g1_i12
107bp
7661 O_BomoIG13132_complete:A_BomoIG_DN31344_c0_g1_i12
106bp
7662 O_BomoIG13133_3prime_partial:A_BomoIG_DN31344_c0_g1_i13
2927bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
7663 O_BomoIG13134_complete:A_BomoIG_DN31344_c0_g1_i13
206bp
7664 O_BomoIG13135_complete:A_BomoIG_DN31344_c0_g1_i13
168bp
7665 O_BomoIG13136_complete:A_BomoIG_DN31344_c0_g1_i13
160bp
7666 O_BomoIG13137_complete:A_BomoIG_DN31344_c0_g1_i13
107bp
7667 O_BomoIG13138_complete:A_BomoIG_DN31344_c0_g1_i13
106bp
7668 O_BomoIG13139_5prime_partial:A_BomoIG_DN31344_c0_g1_i13
100bp
7669 O_BomoIG1313_complete:A_BomoIG_DN30202_c7_g1_i5
301bp
 protein_YIPF2_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0003674 F molecular_function
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
7670 O_BomoIG13140_complete:A_BomoIG_DN31300_c7_g6_i1
121bp
7671 O_BomoIG13141_complete:A_BomoIG_DN31366_c1_g1_i1
105bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
7672 O_BomoIG13142_complete:A_BomoIG_DN31366_c1_g1_i2
325bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
7673 O_BomoIG13143_complete:A_BomoIG_DN31366_c1_g1_i3
474bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
7674 O_BomoIG13144_complete:A_BomoIG_DN31366_c1_g1_i4
406bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
7675 O_BomoIG13145_complete:A_BomoIG_DN31366_c1_g1_i5
555bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
7676 O_BomoIG13146_complete:A_BomoIG_DN31366_c1_g1_i6
476bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
7677 O_BomoIG13147_complete:A_BomoIG_DN31366_c1_g1_i7
200bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
7678 O_BomoIG13148_complete:A_BomoIG_DN31366_c1_g1_i9
206bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
7679 O_BomoIG13149_complete:A_BomoIG_DN31366_c2_g1_i1
106bp
 BCP_inhibitor_precursor_[Bombyx_mori]
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
7680 O_BomoIG1314_complete:A_BomoIG_DN30202_c7_g3_i7
321bp
 protein_crumbs_[Bombyx_mori]
GO:0001738 P morphogenesis of a polarized epithelium
GO:0001745 P compound eye morphogenesis
GO:0002009 P morphogenesis of an epithelium
GO:0005080 F protein kinase C binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0007043 P cell-cell junction assembly
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007424 P open tracheal system development
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007443 P Malpighian tubule morphogenesis
GO:0008104 P protein localization
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016028 C rhabdomere
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0016332 P establishment or maintenance of polarity of embryonic epithelium
GO:0016334 P establishment or maintenance of polarity of follicular epithelium
GO:0030154 P cell differentiation
GO:0030507 F spectrin binding
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 P regulation of protein localization
GO:0033157 P regulation of intracellular protein transport
GO:0034332 P adherens junction organization
GO:0035002 P liquid clearance, open tracheal system
GO:0035003 C subapical complex
GO:0035088 P establishment or maintenance of apical/basal cell polarity
GO:0035090 P maintenance of apical/basal cell polarity
GO:0035239 P tube morphogenesis
GO:0035330 P regulation of hippo signaling
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0042327 P positive regulation of phosphorylation
GO:0045186 P zonula adherens assembly
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198 P establishment of epithelial cell apical/basal polarity
GO:0045218 P zonula adherens maintenance
GO:0045494 P photoreceptor cell maintenance
GO:0045570 P regulation of imaginal disc growth
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046621 P negative regulation of organ growth
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048477 P oogenesis
GO:0050821 P protein stabilization
GO:0051642 P centrosome localization
GO:0061024 P membrane organization
GO:0061336 P cell morphogenesis involved in Malpighian tubule morphogenesis
GO:0061541 P rhabdomere morphogenesis
GO:0098813 P nuclear chromosome segregation
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