SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6241 O_BomoIG11855_complete:A_BomoIG_DN31358_c0_g1_i26
256bp
6242 O_BomoIG11856_complete:A_BomoIG_DN31358_c0_g1_i26
135bp
 PREDICTED:_double-stranded_RNA-specific_editase_1-like_[Biomphalaria_glabrata]
6243 O_BomoIG11857_complete:A_BomoIG_DN31358_c0_g1_i26
114bp
6244 O_BomoIG11858_internal:A_BomoIG_DN31358_c0_g1_i27
325bp
 adenosine_deaminase,_partial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004000 F adenosine deaminase activity
GO:0005634 C nucleus
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
6245 O_BomoIG11859_complete:A_BomoIG_DN31358_c0_g1_i28
996bp
 double-stranded_RNA-specific_editase_1_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003726 F double-stranded RNA adenosine deaminase activity
GO:0004000 F adenosine deaminase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006382 P adenosine to inosine editing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0016553 P base conversion or substitution editing
GO:0016556 P mRNA modification
GO:0016787 F hydrolase activity
GO:0030336 P negative regulation of cell migration
GO:0042803 F protein homodimerization activity
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045070 P positive regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0050685 P positive regulation of mRNA processing
GO:0051726 P regulation of cell cycle
6246 O_BomoIG1185_3prime_partial:A_BomoIG_DN30217_c8_g1_i5
253bp
 popeye_domain-containing_protein_3-like_[Helicoverpa_armigera]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042391 P regulation of membrane potential
6247 O_BomoIG11860_complete:A_BomoIG_DN31358_c0_g1_i28
256bp
6248 O_BomoIG11861_complete:A_BomoIG_DN31358_c0_g1_i28
135bp
 PREDICTED:_double-stranded_RNA-specific_editase_1-like_[Biomphalaria_glabrata]
6249 O_BomoIG11862_complete:A_BomoIG_DN31358_c0_g1_i28
114bp
6250 O_BomoIG11863_complete:A_BomoIG_DN31358_c0_g1_i29
616bp
6251 O_BomoIG11864_complete:A_BomoIG_DN31358_c0_g1_i29
256bp
6252 O_BomoIG11865_complete:A_BomoIG_DN31358_c0_g1_i29
217bp
 double-stranded_RNA-specific_editase_1_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003726 F double-stranded RNA adenosine deaminase activity
GO:0004000 F adenosine deaminase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006382 P adenosine to inosine editing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0016553 P base conversion or substitution editing
GO:0016556 P mRNA modification
GO:0016787 F hydrolase activity
GO:0030336 P negative regulation of cell migration
GO:0042803 F protein homodimerization activity
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045070 P positive regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0050685 P positive regulation of mRNA processing
GO:0051726 P regulation of cell cycle
6253 O_BomoIG11866_complete:A_BomoIG_DN31358_c0_g1_i29
120bp
6254 O_BomoIG11867_complete:A_BomoIG_DN31358_c0_g1_i29
101bp
6255 O_BomoIG11868_complete:A_BomoIG_DN31358_c0_g1_i30
1389bp
 double-stranded_RNA-specific_editase_Adar_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003726 F double-stranded RNA adenosine deaminase activity
GO:0004000 F adenosine deaminase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006382 P adenosine to inosine editing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0016553 P base conversion or substitution editing
GO:0016556 P mRNA modification
GO:0016787 F hydrolase activity
GO:0030336 P negative regulation of cell migration
GO:0042803 F protein homodimerization activity
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045070 P positive regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0050685 P positive regulation of mRNA processing
GO:0051726 P regulation of cell cycle
6256 O_BomoIG11869_complete:A_BomoIG_DN31358_c0_g1_i30
256bp
6257 O_BomoIG1186_complete:A_BomoIG_DN30217_c8_g1_i6
348bp
 popeye_domain-containing_protein_3-like_[Helicoverpa_armigera]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042391 P regulation of membrane potential
6258 O_BomoIG11870_complete:A_BomoIG_DN31358_c0_g1_i30
135bp
 PREDICTED:_double-stranded_RNA-specific_editase_1-like_[Biomphalaria_glabrata]
6259 O_BomoIG11871_complete:A_BomoIG_DN31358_c0_g1_i30
114bp
6260 O_BomoIG11872_complete:A_BomoIG_DN31315_c3_g1_i2
1008bp
 LOW_QUALITY_PROTEIN:_dynein_heavy_chain_2,_axonemal-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
GO:0031512 C motile cilium
GO:0036156 C inner dynein arm
GO:0042995 C cell projection
6261 O_BomoIG11873_complete:A_BomoIG_DN31315_c3_g1_i3
194bp
 LOW_QUALITY_PROTEIN:_dynein_heavy_chain_2,_axonemal-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
GO:0031512 C motile cilium
GO:0036156 C inner dynein arm
GO:0042995 C cell projection
6262 O_BomoIG11874_internal:A_BomoIG_DN31315_c4_g1_i1
235bp
 uncharacterized_protein_LOC101738426_[Bombyx_mori]
6263 O_BomoIG11875_complete:A_BomoIG_DN31315_c4_g3_i1
433bp
 atf2_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003151 P outflow tract morphogenesis
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0008134 F transcription factor binding
GO:0008140 F cAMP response element binding protein binding
GO:0009414 P response to water deprivation
GO:0016020 C membrane
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0019901 F protein kinase binding
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0032915 P positive regulation of transforming growth factor beta2 production
GO:0035497 F cAMP response element binding
GO:0035861 C site of double-strand break
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0045444 P fat cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
GO:0097186 P amelogenesis
GO:1902110 P positive regulation of mitochondrial membrane permeability involved in apoptotic process
6264 O_BomoIG11876_complete:A_BomoIG_DN31315_c4_g3_i1
117bp
6265 O_BomoIG11877_3prime_partial:A_BomoIG_DN31315_c4_g1_i3
151bp
 uncharacterized_protein_LOC101738426_[Bombyx_mori]
6266 O_BomoIG11878_3prime_partial:A_BomoIG_DN31315_c4_g1_i5
204bp
 uncharacterized_protein_LOC101738426_[Bombyx_mori]
6267 O_BomoIG11879_5prime_partial:A_BomoIG_DN31315_c4_g3_i2
299bp
 atf2_isoform_X1_[Bombyx_mori]
6268 O_BomoIG1187_3prime_partial:A_BomoIG_DN30217_c8_g1_i8
345bp
 popeye_domain-containing_protein_3-like_[Helicoverpa_armigera]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042391 P regulation of membrane potential
6269 O_BomoIG11880_5prime_partial:A_BomoIG_DN31315_c4_g3_i3
299bp
 atf2_isoform_X1_[Bombyx_mori]
6270 O_BomoIG11881_3prime_partial:A_BomoIG_DN31315_c4_g1_i7
162bp
 uncharacterized_protein_LOC101738426_[Bombyx_mori]
previous next from show/104180

- SilkBase 1999-2023 -