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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5071 O_BomoIG10801_complete:A_BomoIG_DN33703_c0_g1_i11
258bp
 39S_ribosomal_protein_L47,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
5072 O_BomoIG10802_complete:A_BomoIG_DN33703_c0_g1_i12
286bp
 mediator_of_RNA_polymerase_II_transcription_subunit_6_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0070847 C core mediator complex
5073 O_BomoIG10803_complete:A_BomoIG_DN33703_c0_g1_i12
113bp
 uncharacterized_protein_LOC101737389_[Bombyx_mori]
5074 O_BomoIG10804_complete:A_BomoIG_DN33703_c0_g1_i13
111bp
 uncharacterized_protein_C15orf41_homolog_isoform_X2_[Bombyx_mori]
5075 O_BomoIG10805_5prime_partial:A_BomoIG_DN33703_c0_g6_i3
432bp
 protein_tyrosine_phosphatase_domain-containing_protein_1_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030030 P cell projection organization
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0060271 P cilium assembly
5076 O_BomoIG10806_complete:A_BomoIG_DN33703_c0_g6_i3
149bp
5077 O_BomoIG10807_complete:A_BomoIG_DN33703_c0_g6_i3
121bp
5078 O_BomoIG10808_5prime_partial:A_BomoIG_DN33703_c0_g6_i3
107bp
5079 O_BomoIG10809_complete:A_BomoIG_DN33703_c0_g1_i14
288bp
 uncharacterized_protein_C15orf41_homolog_isoform_X1_[Bombyx_mori]
5080 O_BomoIG1080_complete:A_BomoIG_DN30255_c2_g3_i1
248bp
5081 O_BomoIG10810_complete:A_BomoIG_DN33703_c0_g1_i14
258bp
 39S_ribosomal_protein_L47,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
5082 O_BomoIG10811_5prime_partial:A_BomoIG_DN33703_c1_g2_i1
107bp
 PREDICTED:_TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007059 P chromosome segregation
GO:0008022 F protein C-terminus binding
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032508 P DNA duplex unwinding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035315 P hair cell differentiation
GO:0043139 F 5'-3' DNA helicase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071817 C MMXD complex
GO:1901990 P regulation of mitotic cell cycle phase transition
5083 O_BomoIG10812_complete:A_BomoIG_DN33703_c1_g1_i2
226bp
 tetraspanin-31-B_isoform_X1_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5084 O_BomoIG10813_complete:A_BomoIG_DN33703_c1_g1_i5
218bp
 tetraspanin-13_isoform_X2_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5085 O_BomoIG10814_complete:A_BomoIG_DN33703_c1_g2_i2
576bp
 TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007059 P chromosome segregation
GO:0008022 F protein C-terminus binding
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032508 P DNA duplex unwinding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035315 P hair cell differentiation
GO:0043139 F 5'-3' DNA helicase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071817 C MMXD complex
GO:1901990 P regulation of mitotic cell cycle phase transition
5086 O_BomoIG10815_complete:A_BomoIG_DN33703_c1_g2_i2
220bp
 TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000439 C transcription factor TFIIH core complex
GO:0001666 P response to hypoxia
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007059 P chromosome segregation
GO:0007568 P aging
GO:0008022 F protein C-terminus binding
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008283 P cell population proliferation
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0009411 P response to UV
GO:0009650 P UV protection
GO:0009791 P post-embryonic development
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0021510 P spinal cord development
GO:0022405 P hair cycle process
GO:0030198 P extracellular matrix organization
GO:0030282 P bone mineralization
GO:0032289 P central nervous system myelin formation
GO:0032508 P DNA duplex unwinding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035264 P multicellular organism growth
GO:0035315 P hair cell differentiation
GO:0040016 P embryonic cleavage
GO:0043139 F 5'-3' DNA helicase activity
GO:0043249 P erythrocyte maturation
GO:0043388 P positive regulation of DNA binding
GO:0043588 P skin development
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0048820 P hair follicle maturation
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0060218 P hematopoietic stem cell differentiation
GO:0071817 C MMXD complex
GO:1901990 P regulation of mitotic cell cycle phase transition
5087 O_BomoIG10816_complete:A_BomoIG_DN33703_c1_g2_i2
152bp
5088 O_BomoIG10817_complete:A_BomoIG_DN33703_c1_g2_i2
131bp
5089 O_BomoIG10818_complete:A_BomoIG_DN33703_c1_g1_i6
218bp
 tetraspanin-13_isoform_X2_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5090 O_BomoIG10819_complete:A_BomoIG_DN33703_c1_g2_i3
761bp
 TFIIH_basal_transcription_factor_complex_helicase_XPD_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007059 P chromosome segregation
GO:0008022 F protein C-terminus binding
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032508 P DNA duplex unwinding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035315 P hair cell differentiation
GO:0043139 F 5'-3' DNA helicase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071817 C MMXD complex
GO:1901990 P regulation of mitotic cell cycle phase transition
5091 O_BomoIG1081_complete:A_BomoIG_DN30255_c2_g3_i1
103bp
5092 O_BomoIG10820_complete:A_BomoIG_DN33703_c1_g2_i3
131bp
5093 O_BomoIG10821_3prime_partial:A_BomoIG_DN33774_c0_g2_i1
746bp
 hypothetical_protein_2_-_silkworm_transposon_mag
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
5094 O_BomoIG10822_5prime_partial:A_BomoIG_DN33774_c0_g2_i1
717bp
 hypothetical_protein_2_-_silkworm_transposon_mag
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
5095 O_BomoIG10823_complete:A_BomoIG_DN33774_c0_g2_i1
135bp
 hypothetical_protein_1_-_silkworm_transposon_mag
5096 O_BomoIG10824_5prime_partial:A_BomoIG_DN33774_c0_g2_i2
717bp
 hypothetical_protein_2_-_silkworm_transposon_mag
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
5097 O_BomoIG10825_complete:A_BomoIG_DN33774_c0_g2_i2
312bp
 hypothetical_protein_1_-_silkworm_transposon_mag
5098 O_BomoIG10826_complete:A_BomoIG_DN33774_c0_g2_i2
135bp
 hypothetical_protein_1_-_silkworm_transposon_mag
5099 O_BomoIG10827_5prime_partial:A_BomoIG_DN33774_c0_g2_i4
717bp
 hypothetical_protein_2_-_silkworm_transposon_mag
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
5100 O_BomoIG10828_complete:A_BomoIG_DN33774_c0_g5_i1
412bp
 beta-arrestin-1-like_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0002092 P positive regulation of receptor internalization
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007165 P signal transduction
GO:0009968 P negative regulation of signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031143 C pseudopodium
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
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