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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4081 O_BomoIG103674_5prime_partial:A_BomoIG_DN29862_c7_g3_i11
115bp
4082 O_BomoIG103675_complete:A_BomoIG_DN29862_c7_g3_i11
110bp
4083 O_BomoIG103676_3prime_partial:A_BomoIG_DN29862_c7_g1_i6
214bp
 uncharacterized_protein_LOC101742436_isoform_X2_[Bombyx_mori]
4084 O_BomoIG103677_5prime_partial:A_BomoIG_DN29862_c7_g1_i6
171bp
4085 O_BomoIG103678_complete:A_BomoIG_DN29862_c7_g3_i12
1229bp
 copper-transporting_ATPase_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001974 P blood vessel remodeling
GO:0002082 P regulation of oxidative phosphorylation
GO:0004008 F P-type divalent copper transporter activity
GO:0005375 F copper ion transmembrane transporter activity
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006568 P tryptophan metabolic process
GO:0006584 P catecholamine metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0007005 P mitochondrion organization
GO:0007595 P lactation
GO:0007626 P locomotory behavior
GO:0010041 P response to iron(III) ion
GO:0010043 P response to zinc ion
GO:0010273 P detoxification of copper ion
GO:0015677 P copper ion import
GO:0015679 P plasma membrane copper ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016532 F superoxide dismutase copper chaperone activity
GO:0016787 F hydrolase activity
GO:0018205 P peptidyl-lysine modification
GO:0019430 P removal of superoxide radicals
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021860 P pyramidal neuron development
GO:0021954 P central nervous system neuron development
GO:0030001 P metal ion transport
GO:0030140 C trans-Golgi network transport vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031069 P hair follicle morphogenesis
GO:0031526 C brush border membrane
GO:0032767 F copper-dependent protein binding
GO:0034220 P ion transmembrane transport
GO:0042093 P T-helper cell differentiation
GO:0042414 P epinephrine metabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042417 P dopamine metabolic process
GO:0042428 P serotonin metabolic process
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043085 P positive regulation of catalytic activity
GO:0043473 P pigmentation
GO:0043588 P skin development
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0048251 P elastic fiber assembly
GO:0048286 P lung alveolus development
GO:0048471 C perinuclear region of cytoplasm
GO:0048553 P negative regulation of catalytic activity
GO:0048554 P positive regulation of catalytic activity
GO:0048812 P neuron projection morphogenesis
GO:0051216 P cartilage development
GO:0051353 P positive regulation of oxidoreductase activity
GO:0051542 P elastin biosynthetic process
GO:0060003 P copper ion export
4086 O_BomoIG103679_complete:A_BomoIG_DN29862_c7_g3_i12
161bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
4087 O_BomoIG10367_5prime_partial:A_BomoIG_DN33725_c0_g1_i4
119bp
4088 O_BomoIG103680_complete:A_BomoIG_DN29862_c7_g3_i12
138bp
4089 O_BomoIG103681_complete:A_BomoIG_DN29862_c7_g3_i12
120bp
4090 O_BomoIG103682_complete:A_BomoIG_DN29862_c7_g3_i12
110bp
4091 O_BomoIG103683_complete:A_BomoIG_DN29862_c7_g3_i12
106bp
4092 O_BomoIG103684_complete:A_BomoIG_DN29862_c7_g3_i12
105bp
 Uncharacterised_protein_[Streptococcus_pneumoniae]
4093 O_BomoIG103685_5prime_partial:A_BomoIG_DN29862_c7_g1_i7
171bp
4094 O_BomoIG103686_3prime_partial:A_BomoIG_DN29862_c7_g1_i7
166bp
 uncharacterized_protein_LOC101742436_isoform_X3_[Bombyx_mori]
4095 O_BomoIG103687_complete:A_BomoIG_DN29862_c7_g3_i13
199bp
 copper-transporting_ATPase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001974 P blood vessel remodeling
GO:0002082 P regulation of oxidative phosphorylation
GO:0004008 F P-type divalent copper transporter activity
GO:0005375 F copper ion transmembrane transporter activity
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006568 P tryptophan metabolic process
GO:0006584 P catecholamine metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0007005 P mitochondrion organization
GO:0007595 P lactation
GO:0007626 P locomotory behavior
GO:0010041 P response to iron(III) ion
GO:0010043 P response to zinc ion
GO:0010273 P detoxification of copper ion
GO:0015677 P copper ion import
GO:0015679 P plasma membrane copper ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016532 F superoxide dismutase copper chaperone activity
GO:0016787 F hydrolase activity
GO:0018205 P peptidyl-lysine modification
GO:0019430 P removal of superoxide radicals
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021860 P pyramidal neuron development
GO:0021954 P central nervous system neuron development
GO:0030001 P metal ion transport
GO:0030140 C trans-Golgi network transport vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031069 P hair follicle morphogenesis
GO:0031526 C brush border membrane
GO:0032767 F copper-dependent protein binding
GO:0034220 P ion transmembrane transport
GO:0042093 P T-helper cell differentiation
GO:0042414 P epinephrine metabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042417 P dopamine metabolic process
GO:0042428 P serotonin metabolic process
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043085 P positive regulation of catalytic activity
GO:0043473 P pigmentation
GO:0043588 P skin development
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0048251 P elastic fiber assembly
GO:0048286 P lung alveolus development
GO:0048471 C perinuclear region of cytoplasm
GO:0048553 P negative regulation of catalytic activity
GO:0048554 P positive regulation of catalytic activity
GO:0048812 P neuron projection morphogenesis
GO:0051216 P cartilage development
GO:0051353 P positive regulation of oxidoreductase activity
GO:0051542 P elastin biosynthetic process
GO:0060003 P copper ion export
4096 O_BomoIG103688_complete:A_BomoIG_DN29862_c7_g3_i13
140bp
4097 O_BomoIG103689_internal:A_BomoIG_DN29864_c1_g1_i1
117bp
4098 O_BomoIG10368_5prime_partial:A_BomoIG_DN33725_c0_g14_i1
113bp
 lachesin_[Bombyx_mori]
4099 O_BomoIG103690_complete:A_BomoIG_DN29864_c2_g3_i1
536bp
 zinc_finger_protein_226_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4100 O_BomoIG103691_complete:A_BomoIG_DN29864_c2_g3_i1
148bp
4101 O_BomoIG103692_complete:A_BomoIG_DN29864_c2_g3_i1
132bp
4102 O_BomoIG103693_complete:A_BomoIG_DN29864_c2_g3_i1
106bp
4103 O_BomoIG103694_complete:A_BomoIG_DN29864_c2_g4_i1
556bp
 zinc_finger_protein_567_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000278 P mitotic cell cycle
GO:0000976 F transcription cis-regulatory region binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051567 P histone H3-K9 methylation
GO:0070491 F DNA-binding transcription factor binding
4104 O_BomoIG103695_complete:A_BomoIG_DN29864_c2_g3_i2
569bp
 zinc_finger_protein_226_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4105 O_BomoIG103696_complete:A_BomoIG_DN29864_c2_g3_i2
148bp
4106 O_BomoIG103697_complete:A_BomoIG_DN29864_c2_g3_i2
132bp
4107 O_BomoIG103698_complete:A_BomoIG_DN29864_c2_g3_i2
106bp
4108 O_BomoIG103699_complete:A_BomoIG_DN29864_c2_g6_i1
100bp
4109 O_BomoIG10369_complete:A_BomoIG_DN33725_c0_g8_i5
135bp
 probable_28S_rRNA_(cytosine-C(5))-methyltransferase_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
4110 O_BomoIG1036_complete:A_BomoIG_DN30287_c0_g1_i5
203bp
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