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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3691 O_BomoIG103322_complete:A_BomoIG_DN29894_c0_g1_i10
129bp
3692 O_BomoIG103323_complete:A_BomoIG_DN29894_c0_g1_i10
100bp
3693 O_BomoIG103324_complete:A_BomoIG_DN29894_c0_g1_i11
208bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3694 O_BomoIG103325_complete:A_BomoIG_DN29894_c0_g1_i11
129bp
3695 O_BomoIG103326_3prime_partial:A_BomoIG_DN29894_c0_g1_i12
551bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3696 O_BomoIG103327_complete:A_BomoIG_DN29894_c0_g1_i12
241bp
3697 O_BomoIG103328_complete:A_BomoIG_DN29894_c0_g1_i12
129bp
3698 O_BomoIG103329_5prime_partial:A_BomoIG_DN29894_c0_g1_i12
120bp
3699 O_BomoIG10332_5prime_partial:A_BomoIG_DN33705_c2_g2_i1
2215bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
3700 O_BomoIG103330_complete:A_BomoIG_DN29894_c0_g1_i13
348bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3701 O_BomoIG103331_complete:A_BomoIG_DN29894_c0_g1_i13
155bp
3702 O_BomoIG103332_complete:A_BomoIG_DN29894_c0_g1_i13
129bp
3703 O_BomoIG103333_internal:A_BomoIG_DN29894_c0_g1_i14
415bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3704 O_BomoIG103334_complete:A_BomoIG_DN29894_c0_g1_i14
182bp
3705 O_BomoIG103335_5prime_partial:A_BomoIG_DN29894_c0_g1_i14
120bp
3706 O_BomoIG103336_complete:A_BomoIG_DN29894_c0_g1_i15
348bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3707 O_BomoIG103337_complete:A_BomoIG_DN29894_c0_g1_i15
155bp
3708 O_BomoIG103338_complete:A_BomoIG_DN29894_c0_g1_i15
129bp
3709 O_BomoIG103339_3prime_partial:A_BomoIG_DN29894_c0_g1_i16
301bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101745926_[Bombyx_mori]
3710 O_BomoIG10333_complete:A_BomoIG_DN33705_c2_g2_i1
168bp
3711 O_BomoIG103340_complete:A_BomoIG_DN29894_c0_g1_i16
129bp
3712 O_BomoIG103341_internal:A_BomoIG_DN29851_c2_g1_i1
273bp
 retinal_homeobox_protein_Rx1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0010906 P regulation of glucose metabolic process
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
3713 O_BomoIG103342_complete:A_BomoIG_DN29851_c2_g1_i1
146bp
3714 O_BomoIG103343_internal:A_BomoIG_DN29851_c2_g1_i2
162bp
 retinal_homeobox_protein_Rx1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0010906 P regulation of glucose metabolic process
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
3715 O_BomoIG103344_complete:A_BomoIG_DN29851_c3_g3_i1
170bp
 LAS1-like_protein_[Operophtera_brumata]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0071339 C MLL1 complex
3716 O_BomoIG103345_complete:A_BomoIG_DN29851_c3_g4_i1
203bp
 PREDICTED:_exosome_complex_component_RRP45_[Plutella_xylostella]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000228 C nuclear chromosome
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
3717 O_BomoIG103346_complete:A_BomoIG_DN29851_c3_g4_i3
287bp
 HMGB_protein_isoform_X1_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000228 C nuclear chromosome
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
3718 O_BomoIG103347_5prime_partial:A_BomoIG_DN29851_c3_g4_i4
255bp
 HMGB_protein_isoform_X1_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000228 C nuclear chromosome
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
3719 O_BomoIG103348_internal:A_BomoIG_DN29851_c3_g4_i5
186bp
 Exosome_complex_component_RRP45_[Papilio_xuthus]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000228 C nuclear chromosome
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
3720 O_BomoIG103349_complete:A_BomoIG_DN29851_c3_g3_i2
521bp
 uncharacterized_protein_LOC101741360_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0071339 C MLL1 complex
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