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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3121 O_BomoIG10280_complete:A_BomoIG_DN33769_c1_g1_i13
121bp
3122 O_BomoIG102810_complete:A_BomoIG_DN29852_c6_g1_i4
226bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3123 O_BomoIG102811_complete:A_BomoIG_DN29852_c6_g1_i6
328bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3124 O_BomoIG102812_complete:A_BomoIG_DN29852_c6_g1_i7
429bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3125 O_BomoIG102813_complete:A_BomoIG_DN29852_c6_g1_i9
222bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
3126 O_BomoIG102814_5prime_partial:A_BomoIG_DN29852_c6_g1_i10
121bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3127 O_BomoIG102815_complete:A_BomoIG_DN29852_c6_g1_i11
122bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
3128 O_BomoIG102816_complete:A_BomoIG_DN29852_c6_g1_i13
222bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
3129 O_BomoIG102817_complete:A_BomoIG_DN29852_c6_g1_i13
211bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3130 O_BomoIG102818_complete:A_BomoIG_DN29852_c6_g1_i14
533bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3131 O_BomoIG102819_5prime_partial:A_BomoIG_DN29852_c6_g1_i15
326bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3132 O_BomoIG10281_complete:A_BomoIG_DN33727_c2_g5_i1
220bp
 ubiquitin_carboxyl-terminal_hydrolase_nonstop_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008347 P glial cell migration
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021782 P glial cell development
GO:0036459 F thiol-dependent deubiquitinase
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071819 C DUBm complex
3133 O_BomoIG102820_5prime_partial:A_BomoIG_DN29852_c6_g1_i16
303bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3134 O_BomoIG102821_complete:A_BomoIG_DN29852_c6_g1_i17
267bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3135 O_BomoIG102822_complete:A_BomoIG_DN29852_c6_g1_i17
222bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
3136 O_BomoIG102823_complete:A_BomoIG_DN29852_c6_g1_i18
477bp
 pre-piRNA_3'-exonuclease_trimmer-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3137 O_BomoIG102824_complete:A_BomoIG_DN29877_c0_g1_i2
1044bp
 ubiquitin-like_modifier-activating_enzyme_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000792 C heterochromatin
GO:0004839 F ubiquitin activating enzyme activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0006464 P cellular protein modification process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0010008 C endosome membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019941 P modification-dependent protein catabolic process
GO:0030057 C desmosome
GO:0030867 C rough endoplasmic reticulum membrane
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
3138 O_BomoIG102825_complete:A_BomoIG_DN29877_c0_g1_i2
123bp
3139 O_BomoIG102826_5prime_partial:A_BomoIG_DN29857_c0_g1_i1
141bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3140 O_BomoIG102827_complete:A_BomoIG_DN29857_c0_g1_i2
317bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3141 O_BomoIG102828_complete:A_BomoIG_DN29857_c0_g1_i3
128bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3142 O_BomoIG102829_complete:A_BomoIG_DN29857_c0_g1_i4
317bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3143 O_BomoIG10282_complete:A_BomoIG_DN33727_c2_g5_i2
183bp
 ubiquitin_carboxyl-terminal_hydrolase_nonstop_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008347 P glial cell migration
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021782 P glial cell development
GO:0036459 F thiol-dependent deubiquitinase
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071819 C DUBm complex
3144 O_BomoIG102830_complete:A_BomoIG_DN29857_c0_g1_i6
317bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3145 O_BomoIG102831_complete:A_BomoIG_DN29857_c0_g1_i7
273bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3146 O_BomoIG102832_complete:A_BomoIG_DN29857_c0_g1_i11
317bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3147 O_BomoIG102833_complete:A_BomoIG_DN29857_c0_g1_i13
236bp
 uncharacterized_protein_LOC101742817_[Bombyx_mori]
3148 O_BomoIG102834_internal:A_BomoIG_DN29801_c0_g1_i3
104bp
3149 O_BomoIG102835_internal:A_BomoIG_DN29801_c0_g1_i3
103bp
 fibroin_heavy_chain_precursor_[Bombyx_mori]
3150 O_BomoIG102836_internal:A_BomoIG_DN29801_c0_g1_i4
112bp
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