Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
271	O_BomoIG100244_complete:A_BomoIG_DN31561_c2_g1_i1 251bp	Bomo_Chr12	mediator_of_RNA_polymerase_II_transcription_subunit_8_[Bombyx_mori]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006366 P transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0016592 C mediator complex GO:0051726 P regulation of cell cycle
272	O_BomoIG100245_internal:A_BomoIG_DN31561_c2_g5_i1 325bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
273	O_BomoIG100246_5prime_partial:A_BomoIG_DN31561_c2_g5_i1 106bp	Bomo_Chr21
274	O_BomoIG100247_5prime_partial:A_BomoIG_DN31561_c2_g5_i4 370bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
275	O_BomoIG100248_5prime_partial:A_BomoIG_DN31561_c2_g5_i4 106bp	Bomo_Chr21
276	O_BomoIG100249_complete:A_BomoIG_DN31561_c2_g5_i4 100bp	Bomo_Chr21
277	O_BomoIG10024_5prime_partial:A_BomoIG_DN33729_c1_g1_i8 105bp	Bomo_Chr26
278	O_BomoIG100250_internal:A_BomoIG_DN31561_c2_g6_i2 243bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
279	O_BomoIG100251_5prime_partial:A_BomoIG_DN31561_c2_g6_i2 114bp	Bomo_Chr21
280	O_BomoIG100252_internal:A_BomoIG_DN31561_c2_g5_i5 109bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
281	O_BomoIG100253_internal:A_BomoIG_DN31561_c2_g5_i6 381bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
282	O_BomoIG100254_5prime_partial:A_BomoIG_DN31561_c2_g5_i6 148bp	Bomo_Chr21
283	O_BomoIG100255_5prime_partial:A_BomoIG_DN31561_c2_g5_i6 109bp	Bomo_Chr21
284	O_BomoIG100256_5prime_partial:A_BomoIG_DN31561_c2_g5_i6 106bp	Bomo_Chr21
285	O_BomoIG100257_complete:A_BomoIG_DN31561_c2_g1_i4 142bp	Bomo_Chr12	mediator_of_RNA_polymerase_II_transcription_subunit_8_[Bombyx_mori]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006366 P transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0016592 C mediator complex GO:0051726 P regulation of cell cycle
286	O_BomoIG100258_5prime_partial:A_BomoIG_DN31561_c2_g6_i9 227bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
287	O_BomoIG100259_5prime_partial:A_BomoIG_DN31561_c2_g6_i10 227bp	Bomo_Chr21	Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000403 F Y-form DNA binding GO:0000724 P double-strand break repair via homologous recombination GO:0000731 P DNA synthesis involved in DNA repair GO:0000732 P strand displacement GO:0000733 P obsolete DNA strand renaturation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003824 F catalytic activity GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006302 P double-strand break repair GO:0006303 P double-strand break repair via nonhomologous end joining GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0007131 P reciprocal meiotic recombination GO:0008026 F helicase activity GO:0008094 F ATP-dependent activity, acting on DNA GO:0009378 F four-way junction helicase activity GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:0044237 P cellular metabolic process GO:0045003 P double-strand break repair via synthesis-dependent strand annealing GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
288	O_BomoIG10025_complete:A_BomoIG_DN33729_c1_g1_i8 103bp	Bomo_Chr26	protein_Skeletor,_isoforms_B/C_[Bombyx_mori]	GO:0005198 F structural molecule activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0005700 C polytene chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0005819 C spindle GO:0005856 C cytoskeleton GO:0005874 C microtubule GO:0006997 P nucleus organization GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0016363 C nuclear matrix GO:0051225 P spindle assembly GO:0051301 P cell division GO:0051321 P meiotic cell cycle
289	O_BomoIG100260_complete:A_BomoIG_DN31561_c2_g1_i6 174bp	Bomo_Chr12	mediator_of_RNA_polymerase_II_transcription_subunit_8_[Bombyx_mori]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0016592 C mediator complex
290	O_BomoIG100261_complete:A_BomoIG_DN31561_c2_g1_i9 120bp	Bomo_Chr12	mediator_of_RNA_polymerase_II_transcription_subunit_8_[Bombyx_mori]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006366 P transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0016592 C mediator complex GO:0051726 P regulation of cell cycle
291	O_BomoIG100262_complete:A_BomoIG_DN31528_c2_g1_i2 107bp	Bomo_Chr8	uncharacterized_protein_LOC101736479_isoform_X2_[Bombyx_mori]
292	O_BomoIG100263_complete:A_BomoIG_DN31528_c2_g1_i3 294bp	Bomo_Chr8	uncharacterized_protein_LOC101736479_isoform_X1_[Bombyx_mori]
293	O_BomoIG100264_complete:A_BomoIG_DN31528_c2_g3_i1 112bp	Bomo_Chr4	PQ-loop_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]	GO:0016020 C membrane GO:0016021 C integral component of membrane
294	O_BomoIG100265_complete:A_BomoIG_DN31528_c2_g1_i4 299bp	Bomo_Chr8	uncharacterized_protein_LOC101736479_isoform_X1_[Bombyx_mori]
295	O_BomoIG100266_complete:A_BomoIG_DN31528_c2_g1_i4 100bp	Bomo_Chr8
296	O_BomoIG100267_5prime_partial:A_BomoIG_DN31528_c2_g6_i1 1611bp	Bomo_Chr26	serine/arginine_repetitive_matrix_protein_2_[Bombyx_mori]
297	O_BomoIG100268_complete:A_BomoIG_DN31528_c2_g6_i1 181bp	Bomo_Chr26
298	O_BomoIG100269_complete:A_BomoIG_DN31528_c2_g6_i1 178bp	Bomo_Chr26
299	O_BomoIG10026_3prime_partial:A_BomoIG_DN33729_c1_g1_i9 174bp	Bomo_Chr26	protein_Skeletor,_isoforms_B/C_[Bombyx_mori]	GO:0005198 F structural molecule activity GO:0005634 C nucleus GO:0005694 C chromosome GO:0005700 C polytene chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0005819 C spindle GO:0005856 C cytoskeleton GO:0005874 C microtubule GO:0006997 P nucleus organization GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0016363 C nuclear matrix GO:0051225 P spindle assembly GO:0051301 P cell division GO:0051321 P meiotic cell cycle
300	O_BomoIG100270_5prime_partial:A_BomoIG_DN31528_c2_g6_i1 137bp	Bomo_Chr26