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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2611 O_BomoIG102350_5prime_partial:A_BomoIG_DN30723_c0_g1_i1
634bp
 centromere_protein_J_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007099 P centriole replication
GO:0007224 P smoothened signaling pathway
GO:0015631 F tubulin binding
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0030954 P astral microtubule nucleation
GO:0035058 P non-motile cilium assembly
GO:0036064 C ciliary basal body
GO:0043015 F gamma-tubulin binding
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0046599 P regulation of centriole replication
GO:0046785 P microtubule polymerization
GO:0051298 P centrosome duplication
GO:0051301 P cell division
GO:0098534 P centriole assembly
GO:1902857 P positive regulation of non-motile cilium assembly
GO:1903087 P mitotic spindle pole body duplication
GO:1903506 P regulation of nucleic acid-templated transcription
GO:1903887 P motile cilium assembly
2612 O_BomoIG102351_5prime_partial:A_BomoIG_DN30723_c0_g3_i1
203bp
 39S_ribosomal_protein_L44,_mitochondrial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006396 P RNA processing
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0030529 C ribonucleoprotein complex
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2613 O_BomoIG102352_internal:A_BomoIG_DN30723_c0_g3_i2
292bp
 39S_ribosomal_protein_L44,_mitochondrial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006396 P RNA processing
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0030529 C ribonucleoprotein complex
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2614 O_BomoIG102353_internal:A_BomoIG_DN30723_c1_g2_i1
251bp
 ileal_sodium/bile_acid_cotransporter-like_isoform_X3_[Helicoverpa_armigera]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043250 F sodium-dependent organic anion transmembrane transporter activity
GO:0043251 P sodium-dependent organic anion transport
GO:0055085 P transmembrane transport
2615 O_BomoIG102354_3prime_partial:A_BomoIG_DN30723_c1_g2_i3
402bp
 ileal_sodium/bile_acid_cotransporter-like_isoform_X1_[Helicoverpa_armigera]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0008508 F bile acid:sodium symporter activity
GO:0010033 P response to organic substance
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032526 P response to retinoic acid
GO:0055085 P transmembrane transport
2616 O_BomoIG102355_5prime_partial:A_BomoIG_DN30723_c1_g2_i3
132bp
2617 O_BomoIG102356_3prime_partial:A_BomoIG_DN30723_c1_g2_i4
442bp
 ileal_sodium/bile_acid_cotransporter-like_isoform_X1_[Helicoverpa_armigera]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
2618 O_BomoIG102357_5prime_partial:A_BomoIG_DN30723_c1_g2_i4
132bp
2619 O_BomoIG102358_internal:A_BomoIG_DN30723_c1_g2_i6
136bp
 P3_protein_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
2620 O_BomoIG102359_complete:A_BomoIG_DN30723_c1_g3_i1
198bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
2621 O_BomoIG10235_internal:A_BomoIG_DN33753_c2_g3_i2
136bp
2622 O_BomoIG102360_5prime_partial:A_BomoIG_DN30723_c1_g2_i7
130bp
 uncharacterized_protein_LOC101736665_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043250 F sodium-dependent organic anion transmembrane transporter activity
GO:0043251 P sodium-dependent organic anion transport
GO:0055085 P transmembrane transport
2623 O_BomoIG102361_complete:A_BomoIG_DN30723_c1_g2_i7
108bp
2624 O_BomoIG102362_complete:A_BomoIG_DN30723_c1_g3_i2
323bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
2625 O_BomoIG102363_3prime_partial:A_BomoIG_DN30723_c1_g2_i8
442bp
 ileal_sodium/bile_acid_cotransporter-like_isoform_X1_[Helicoverpa_armigera]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
2626 O_BomoIG102364_5prime_partial:A_BomoIG_DN30723_c1_g2_i8
132bp
2627 O_BomoIG102365_3prime_partial:A_BomoIG_DN30723_c1_g2_i9
284bp
 ileal_sodium/bile_acid_cotransporter-like_isoform_X1_[Helicoverpa_armigera]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008508 F bile acid:sodium symporter activity
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
2628 O_BomoIG102366_5prime_partial:A_BomoIG_DN30723_c1_g2_i9
132bp
2629 O_BomoIG102367_complete:A_BomoIG_DN30723_c1_g3_i3
229bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
2630 O_BomoIG102368_complete:A_BomoIG_DN30770_c5_g3_i1
215bp
 hypothetical_protein_OBRU01_06171_[Operophtera_brumata]
2631 O_BomoIG102369_complete:A_BomoIG_DN30770_c5_g3_i1
133bp
 putative_bel12_ag_transposon_polyprotein_[Operophtera_brumata]
2632 O_BomoIG10236_internal:A_BomoIG_DN33753_c2_g1_i2
667bp
 paramyosin_[Bombyx_mandarina]
GO:0003774 F cytoskeletal motor activity
GO:0005737 C cytoplasm
GO:0005863 C striated muscle myosin thick filament
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0008307 F structural constituent of muscle
GO:0016459 C myosin complex
GO:0030016 C myofibril
GO:0030239 P myofibril assembly
GO:0032982 C myosin filament
2633 O_BomoIG102370_complete:A_BomoIG_DN30770_c5_g3_i1
121bp
2634 O_BomoIG102371_complete:A_BomoIG_DN30770_c5_g3_i6
147bp
 hypothetical_protein_OBRU01_06171_[Operophtera_brumata]
2635 O_BomoIG102372_complete:A_BomoIG_DN30790_c5_g2_i3
380bp
 fasciclin-3_isoform_X7_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007611 P learning or memory
GO:0008039 P synaptic target recognition
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0031594 C neuromuscular junction
GO:0031965 C nuclear membrane
GO:0042803 F protein homodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0055037 C recycling endosome
2636 O_BomoIG102373_complete:A_BomoIG_DN30790_c5_g2_i3
139bp
2637 O_BomoIG102374_5prime_partial:A_BomoIG_DN30790_c5_g2_i3
117bp
2638 O_BomoIG102375_complete:A_BomoIG_DN30790_c5_g3_i1
141bp
2639 O_BomoIG102376_5prime_partial:A_BomoIG_DN30790_c5_g3_i1
108bp
2640 O_BomoIG102377_complete:A_BomoIG_DN30790_c5_g2_i6
420bp
 fasciclin-3_isoform_X7_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007611 P learning or memory
GO:0008039 P synaptic target recognition
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0031594 C neuromuscular junction
GO:0031965 C nuclear membrane
GO:0042803 F protein homodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0055037 C recycling endosome
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