SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1501 O_BomoIG101351_complete:A_BomoIG_DN30759_c4_g1_i11
343bp
 uridine_phosphorylase_1_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004850 F uridine phosphorylase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006218 P uridine catabolic process
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0009116 P nucleoside metabolic process
GO:0009166 P nucleotide catabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0042149 P cellular response to glucose starvation
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0046108 P uridine metabolic process
GO:0046135 P pyrimidine nucleoside catabolic process
1502 O_BomoIG101352_complete:A_BomoIG_DN30759_c4_g1_i11
109bp
1503 O_BomoIG101353_5prime_partial:A_BomoIG_DN30759_c5_g1_i1
106bp
1504 O_BomoIG101354_5prime_partial:A_BomoIG_DN30759_c5_g1_i7
108bp
1505 O_BomoIG101355_internal:A_BomoIG_DN30759_c5_g1_i17
105bp
1506 O_BomoIG101356_3prime_partial:A_BomoIG_DN30783_c3_g4_i1
787bp
 rho-associated_protein_kinase_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001726 C ruffle
GO:0003383 P apical constriction
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0006939 P smooth muscle contraction
GO:0007159 P leukocyte cell-cell adhesion
GO:0007165 P signal transduction
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007266 P Rho protein signal transduction
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016525 P negative regulation of angiogenesis
GO:0016740 F transferase activity
GO:0017048 F small GTPase binding
GO:0017049 F small GTPase binding
GO:0022614 P membrane to membrane docking
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0030155 P regulation of cell adhesion
GO:0030866 P cortical actin cytoskeleton organization
GO:0032059 C bleb
GO:0032060 P bleb assembly
GO:0032091 P negative regulation of protein binding
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032970 P regulation of actin filament-based process
GO:0035509 P negative regulation of myosin-light-chain-phosphatase activity
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045616 P regulation of keratinocyte differentiation
GO:0046872 F metal ion binding
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048013 P ephrin receptor signaling pathway
GO:0050900 P leukocyte migration
GO:0050901 P leukocyte tethering or rolling
GO:0051451 P myoblast migration
GO:0051492 P regulation of stress fiber assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0051893 P regulation of focal adhesion assembly
GO:0051894 P positive regulation of focal adhesion assembly
GO:0090002 P protein localization to plasma membrane
GO:1903140 P regulation of establishment of endothelial barrier
GO:1903347 P negative regulation of bicellular tight junction assembly
GO:2000114 P regulation of establishment of cell polarity
GO:2000145 P regulation of cell motility
1507 O_BomoIG101357_complete:A_BomoIG_DN30783_c3_g7_i1
519bp
 zinc_finger_protein_484_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1508 O_BomoIG101358_complete:A_BomoIG_DN30783_c3_g7_i1
104bp
1509 O_BomoIG101359_3prime_partial:A_BomoIG_DN30783_c3_g8_i1
1700bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016197 P endosomal transport
GO:0042995 C cell projection
GO:0051492 P regulation of stress fiber assembly
1510 O_BomoIG10135_complete:A_BomoIG_DN33738_c1_g1_i16
100bp
1511 O_BomoIG101360_complete:A_BomoIG_DN30783_c3_g8_i1
123bp
1512 O_BomoIG101361_internal:A_BomoIG_DN30783_c3_g10_i1
267bp
 TATA_box-binding_protein-like_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
1513 O_BomoIG101362_5prime_partial:A_BomoIG_DN30783_c3_g8_i2
912bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
1514 O_BomoIG101363_3prime_partial:A_BomoIG_DN30783_c3_g8_i2
459bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016197 P endosomal transport
GO:0042995 C cell projection
GO:0051492 P regulation of stress fiber assembly
1515 O_BomoIG101364_complete:A_BomoIG_DN30783_c3_g8_i2
123bp
1516 O_BomoIG101365_5prime_partial:A_BomoIG_DN30783_c3_g3_i5
158bp
1517 O_BomoIG101366_internal:A_BomoIG_DN30783_c3_g8_i3
1406bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016197 P endosomal transport
GO:0042995 C cell projection
GO:0051492 P regulation of stress fiber assembly
1518 O_BomoIG101367_complete:A_BomoIG_DN30783_c3_g8_i3
123bp
1519 O_BomoIG101368_internal:A_BomoIG_DN30783_c3_g8_i4
1377bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016197 P endosomal transport
GO:0042995 C cell projection
GO:0051492 P regulation of stress fiber assembly
1520 O_BomoIG101369_complete:A_BomoIG_DN30783_c3_g8_i4
123bp
1521 O_BomoIG10136_5prime_partial:A_BomoIG_DN33754_c1_g1_i1
141bp
 integrator_complex_subunit_7_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0071479 P cellular response to ionizing radiation
1522 O_BomoIG101370_internal:A_BomoIG_DN30783_c3_g4_i3
122bp
 Rho-associated_protein_kinase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001726 C ruffle
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007266 P Rho protein signal transduction
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0017048 F small GTPase binding
GO:0017049 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0032059 C bleb
GO:0040038 P polar body extrusion after meiotic divisions
GO:0042995 C cell projection
GO:0051451 P myoblast migration
GO:0051492 P regulation of stress fiber assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0051894 P positive regulation of focal adhesion assembly
GO:1903431 P positive regulation of cell maturation
GO:2000114 P regulation of establishment of cell polarity
1523 O_BomoIG101371_5prime_partial:A_BomoIG_DN30783_c3_g10_i2
219bp
 TATA_box-binding_protein-like_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
1524 O_BomoIG101372_3prime_partial:A_BomoIG_DN30783_c3_g8_i5
1732bp
 uncharacterized_protein_LOC101743229_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016197 P endosomal transport
GO:0042995 C cell projection
GO:0051492 P regulation of stress fiber assembly
1525 O_BomoIG101373_complete:A_BomoIG_DN30783_c3_g8_i5
123bp
1526 O_BomoIG101374_5prime_partial:A_BomoIG_DN30783_c3_g10_i3
183bp
 TATA_box-binding_protein-like_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
1527 O_BomoIG101375_complete:A_BomoIG_DN30719_c5_g2_i1
136bp
 proton-coupled_folate_transporter_isoform_X2_[Bombyx_mori]
1528 O_BomoIG101376_complete:A_BomoIG_DN30719_c5_g2_i3
313bp
 proton-coupled_folate_transporter_isoform_X3_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1529 O_BomoIG101377_complete:A_BomoIG_DN30719_c5_g2_i3
111bp
1530 O_BomoIG101378_complete:A_BomoIG_DN30719_c5_g2_i4
153bp
 proton-coupled_folate_transporter_isoform_X2_[Bombyx_mori]
GO:0005542 F folic acid binding
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
previous next from show/104180

- SilkBase 1999-2023 -