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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11971 O_BomoIG17011_5prime_partial:A_BomoIG_DN32624_c4_g1_i12
470bp
 irregular_chiasm_C-roughest_protein_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
11972 O_BomoIG17012_complete:A_BomoIG_DN32624_c4_g1_i13
639bp
 irregular_chiasm_C-roughest_protein_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
11973 O_BomoIG17013_complete:A_BomoIG_DN32624_c4_g1_i14
884bp
 irregular_chiasm_C-roughest_protein_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
11974 O_BomoIG17014_complete:A_BomoIG_DN32624_c4_g1_i16
308bp
 irregular_chiasm_C-roughest_protein_[Bombyx_mori]
11975 O_BomoIG17015_complete:A_BomoIG_DN32624_c4_g5_i2
907bp
 irregular_chiasm_C-roughest_protein-like_[Helicoverpa_armigera]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
11976 O_BomoIG17016_complete:A_BomoIG_DN32624_c4_g2_i17
396bp
 myeloid_differentiation_primary_response_protein_MyD88_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0005737 C cytoplasm
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:0070976 F TIR domain binding
11977 O_BomoIG17017_complete:A_BomoIG_DN32624_c4_g2_i17
110bp
11978 O_BomoIG17018_complete:A_BomoIG_DN32624_c4_g1_i17
823bp
 irregular_chiasm_C-roughest_protein_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
11979 O_BomoIG17019_complete:A_BomoIG_DN32624_c4_g2_i20
396bp
 myeloid_differentiation_primary_response_protein_MyD88_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0002755 P MyD88-dependent toll-like receptor signaling pathway
GO:0005737 C cytoplasm
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:0070976 F TIR domain binding
11980 O_BomoIG1701_complete:A_BomoIG_DN30263_c4_g5_i2
124bp
11981 O_BomoIG17020_complete:A_BomoIG_DN32624_c4_g2_i20
110bp
11982 O_BomoIG17021_complete:A_BomoIG_DN32678_c7_g1_i5
586bp
 uncharacterized_protein_LOC101743259_[Bombyx_mori]
11983 O_BomoIG17022_complete:A_BomoIG_DN32678_c8_g2_i1
901bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
11984 O_BomoIG17023_complete:A_BomoIG_DN32678_c8_g2_i1
126bp
11985 O_BomoIG17024_complete:A_BomoIG_DN32678_c8_g2_i2
805bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
11986 O_BomoIG17025_complete:A_BomoIG_DN32678_c8_g2_i2
126bp
11987 O_BomoIG17026_complete:A_BomoIG_DN32678_c8_g2_i3
122bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
11988 O_BomoIG17027_complete:A_BomoIG_DN32678_c8_g2_i5
784bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
11989 O_BomoIG17028_complete:A_BomoIG_DN32678_c8_g2_i5
126bp
11990 O_BomoIG17029_3prime_partial:A_BomoIG_DN32678_c8_g2_i6
350bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
11991 O_BomoIG1702_5prime_partial:A_BomoIG_DN30263_c4_g5_i3
219bp
 uncharacterized_protein_LOC101742795_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0035303 P regulation of dephosphorylation
GO:0042162 F telomeric DNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0051721 F protein phosphatase 2A binding
11992 O_BomoIG17030_complete:A_BomoIG_DN32678_c8_g2_i9
820bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
11993 O_BomoIG17031_complete:A_BomoIG_DN32678_c8_g2_i9
126bp
11994 O_BomoIG17032_5prime_partial:A_BomoIG_DN24079_c0_g1_i1
105bp
11995 O_BomoIG17033_internal:A_BomoIG_DN24076_c0_g1_i1
116bp
 enhancer_of_mRNA-decapping_protein_4-like_[Bombyx_mori]
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
11996 O_BomoIG17034_internal:A_BomoIG_DN24041_c0_g1_i1
119bp
 PREDICTED:_uncharacterized_protein_LOC106713145_[Papilio_machaon]
11997 O_BomoIG17035_internal:A_BomoIG_DN24095_c0_g1_i2
102bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030856 P regulation of epithelial cell differentiation
11998 O_BomoIG17036_internal:A_BomoIG_DN24095_c0_g1_i2
101bp
11999 O_BomoIG17037_internal:A_BomoIG_DN24095_c0_g1_i2
101bp
12000 O_BomoIG17038_internal:A_BomoIG_DN36774_c0_g1_i1
101bp
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