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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1 O_BomoIG100000_complete:A_BomoIG_DN31593_c2_g1_i2
159bp
2 O_BomoIG100001_complete:A_BomoIG_DN31593_c2_g1_i2
125bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006275 P regulation of DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
3 O_BomoIG100002_complete:A_BomoIG_DN31593_c2_g1_i3
244bp
4 O_BomoIG100003_complete:A_BomoIG_DN31593_c2_g1_i3
227bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5 O_BomoIG100004_complete:A_BomoIG_DN31593_c2_g1_i3
159bp
6 O_BomoIG100005_complete:A_BomoIG_DN31593_c2_g1_i3
125bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006275 P regulation of DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
7 O_BomoIG100006_complete:A_BomoIG_DN31593_c2_g1_i4
515bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8 O_BomoIG100007_complete:A_BomoIG_DN31593_c2_g1_i4
244bp
9 O_BomoIG100008_complete:A_BomoIG_DN31593_c2_g1_i4
202bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
10 O_BomoIG100009_complete:A_BomoIG_DN31593_c2_g1_i4
159bp
11 O_BomoIG10000_complete:A_BomoIG_DN33742_c2_g1_i9
157bp
 actin_cytoskeleton-regulatory_complex_protein_pan1,_partial_[Bombyx_mori]
12 O_BomoIG100010_3prime_partial:A_BomoIG_DN31593_c2_g1_i5
248bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
13 O_BomoIG100011_complete:A_BomoIG_DN31593_c2_g1_i5
244bp
14 O_BomoIG100012_complete:A_BomoIG_DN31593_c2_g1_i5
159bp
15 O_BomoIG100013_complete:A_BomoIG_DN31593_c2_g1_i6
244bp
16 O_BomoIG100014_complete:A_BomoIG_DN31593_c2_g1_i6
227bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
17 O_BomoIG100015_complete:A_BomoIG_DN31593_c2_g1_i6
159bp
18 O_BomoIG100016_complete:A_BomoIG_DN31593_c2_g1_i6
125bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006275 P regulation of DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
19 O_BomoIG100017_complete:A_BomoIG_DN31593_c2_g1_i8
636bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
20 O_BomoIG100018_complete:A_BomoIG_DN31593_c2_g1_i8
244bp
21 O_BomoIG100019_complete:A_BomoIG_DN31593_c2_g1_i8
159bp
22 O_BomoIG10001_3prime_partial:A_BomoIG_DN33742_c2_g1_i11
124bp
 actin_cytoskeleton-regulatory_complex_protein_pan1,_partial_[Bombyx_mori]
23 O_BomoIG100020_complete:A_BomoIG_DN31593_c2_g1_i10
348bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
24 O_BomoIG100021_complete:A_BomoIG_DN31593_c2_g1_i10
244bp
25 O_BomoIG100022_complete:A_BomoIG_DN31593_c2_g1_i10
159bp
26 O_BomoIG100023_complete:A_BomoIG_DN31593_c2_g1_i13
274bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
27 O_BomoIG100024_3prime_partial:A_BomoIG_DN31593_c2_g1_i13
135bp
28 O_BomoIG100025_3prime_partial:A_BomoIG_DN31593_c2_g1_i13
123bp
29 O_BomoIG100026_complete:A_BomoIG_DN31593_c2_g1_i14
125bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006275 P regulation of DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
30 O_BomoIG100027_complete:A_BomoIG_DN31593_c2_g1_i15
244bp
next from show/104180

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