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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2881 O_BomoBR102594_3prime_partial:A_BomoBR_DN29868_c1_g7_i4
199bp
 protein_spire_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0048471 C perinuclear region of cytoplasm
2882 O_BomoBR102595_5prime_partial:A_BomoBR_DN29868_c1_g7_i4
183bp
2883 O_BomoBR102596_3prime_partial:A_BomoBR_DN29868_c1_g3_i7
366bp
 protein_spire_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
2884 O_BomoBR102597_complete:A_BomoBR_DN29868_c1_g3_i7
142bp
2885 O_BomoBR102598_3prime_partial:A_BomoBR_DN29868_c1_g3_i8
356bp
 protein_spire_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
2886 O_BomoBR102599_complete:A_BomoBR_DN29868_c1_g3_i8
130bp
2887 O_BomoBR10259_complete:A_BomoBR_DN31380_c3_g1_i2
109bp
2888 O_BomoBR1025_complete:A_BomoBR_DN30295_c0_g1_i20
122bp
2889 O_BomoBR102600_3prime_partial:A_BomoBR_DN29868_c1_g3_i9
356bp
 protein_spire_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
2890 O_BomoBR102601_complete:A_BomoBR_DN29868_c1_g3_i9
142bp
2891 O_BomoBR102602_3prime_partial:A_BomoBR_DN29868_c1_g7_i5
476bp
 protein_spire_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
2892 O_BomoBR102603_5prime_partial:A_BomoBR_DN29868_c1_g7_i5
183bp
2893 O_BomoBR102604_complete:A_BomoBR_DN29868_c1_g7_i5
126bp
2894 O_BomoBR102605_complete:A_BomoBR_DN29868_c1_g7_i5
113bp
2895 O_BomoBR102606_complete:A_BomoBR_DN29894_c0_g1_i1
157bp
2896 O_BomoBR102607_5prime_partial:A_BomoBR_DN29894_c0_g1_i1
143bp
2897 O_BomoBR102608_complete:A_BomoBR_DN29894_c0_g1_i1
133bp
 CUGBP_Elav-like_family_member_1_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
2898 O_BomoBR102609_5prime_partial:A_BomoBR_DN29894_c0_g1_i2
145bp
2899 O_BomoBR10260_complete:A_BomoBR_DN31380_c3_g1_i3
301bp
 collagen_alpha-1(XVII)_chain_isoform_X1_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001569 P branching involved in blood vessel morphogenesis
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005587 C collagen type IV trimer
GO:0005604 C basement membrane
GO:0007420 P brain development
GO:0007528 P neuromuscular junction development
GO:0030198 P extracellular matrix organization
GO:0030855 P epithelial cell differentiation
GO:0031012 C extracellular matrix
GO:0048407 F platelet-derived growth factor binding
GO:0048514 P blood vessel morphogenesis
GO:0061304 P retinal blood vessel morphogenesis
GO:0061333 P renal tubule morphogenesis
GO:0071230 P cellular response to amino acid stimulus
GO:0071711 P basement membrane organization
2900 O_BomoBR102610_complete:A_BomoBR_DN29894_c0_g1_i2
103bp
 CUGBP_Elav-like_family_member_1_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008380 P RNA splicing
GO:0030317 P flagellated sperm motility
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
2901 O_BomoBR102611_complete:A_BomoBR_DN29894_c0_g1_i3
391bp
 CUGBP_Elav-like_family_member_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2902 O_BomoBR102612_complete:A_BomoBR_DN29894_c0_g1_i3
157bp
2903 O_BomoBR102613_complete:A_BomoBR_DN29894_c0_g1_i3
150bp
2904 O_BomoBR102614_complete:A_BomoBR_DN29894_c0_g1_i3
108bp
2905 O_BomoBR102615_5prime_partial:A_BomoBR_DN29894_c0_g1_i4
172bp
2906 O_BomoBR102616_complete:A_BomoBR_DN29894_c0_g1_i4
103bp
 CUGBP_Elav-like_family_member_1_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008380 P RNA splicing
GO:0030317 P flagellated sperm motility
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
2907 O_BomoBR102617_complete:A_BomoBR_DN29894_c0_g1_i5
391bp
 CUGBP_Elav-like_family_member_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2908 O_BomoBR102618_complete:A_BomoBR_DN29894_c0_g1_i5
157bp
2909 O_BomoBR102619_complete:A_BomoBR_DN29894_c0_g1_i5
150bp
2910 O_BomoBR10261_complete:A_BomoBR_DN31380_c3_g1_i3
152bp
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