SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/103968
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1381 O_BomoBR101243_complete:A_BomoBR_DN29834_c5_g2_i7
270bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1382 O_BomoBR101244_complete:A_BomoBR_DN29834_c5_g2_i7
129bp
1383 O_BomoBR101245_complete:A_BomoBR_DN29834_c5_g2_i7
111bp
1384 O_BomoBR101246_complete:A_BomoBR_DN29834_c5_g2_i8
544bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1385 O_BomoBR101247_complete:A_BomoBR_DN29834_c5_g2_i8
129bp
1386 O_BomoBR101248_complete:A_BomoBR_DN29834_c5_g2_i9
609bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1387 O_BomoBR101249_complete:A_BomoBR_DN29834_c5_g2_i9
129bp
1388 O_BomoBR10124_complete:A_BomoBR_DN31333_c3_g1_i1
213bp
1389 O_BomoBR101250_5prime_partial:A_BomoBR_DN29834_c5_g2_i10
327bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1390 O_BomoBR101251_complete:A_BomoBR_DN29834_c5_g2_i10
129bp
1391 O_BomoBR101252_complete:A_BomoBR_DN29834_c5_g2_i11
369bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1392 O_BomoBR101253_complete:A_BomoBR_DN29834_c5_g2_i11
165bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 P response to interferon-gamma
GO:0034612 P response to tumor necrosis factor
1393 O_BomoBR101254_complete:A_BomoBR_DN29834_c5_g2_i11
129bp
1394 O_BomoBR101255_complete:A_BomoBR_DN29834_c5_g2_i11
113bp
 NEDD8_ultimate_buster_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
1395 O_BomoBR101256_complete:A_BomoBR_DN29834_c5_g2_i11
111bp
1396 O_BomoBR101257_complete:A_BomoBR_DN29892_c5_g1_i1
535bp
 leucine-rich_repeat_and_fibronectin_type_III_domain-containing_protein_1-like_protein_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032474 P otolith morphogenesis
1397 O_BomoBR101258_complete:A_BomoBR_DN29892_c5_g1_i1
107bp
1398 O_BomoBR101259_complete:A_BomoBR_DN29892_c5_g1_i2
583bp
 leucine-rich_repeat_and_fibronectin_type_III_domain-containing_protein_1-like_protein_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032474 P otolith morphogenesis
1399 O_BomoBR10125_complete:A_BomoBR_DN31333_c3_g3_i1
144bp
 RNA_binding_motif_protein_18_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0098792 P xenophagy
1400 O_BomoBR101260_complete:A_BomoBR_DN29892_c5_g1_i2
107bp
1401 O_BomoBR101261_complete:A_BomoBR_DN29892_c5_g2_i1
157bp
 leucine-rich_repeat_and_fibronectin_type_III_domain-containing_protein_1-like_protein_[Bombyx_mori]
1402 O_BomoBR101262_complete:A_BomoBR_DN29892_c5_g2_i1
111bp
 leucine-rich_repeat_and_fibronectin_type_III_domain-containing_protein_1-like_protein_[Bombyx_mori]
1403 O_BomoBR101263_complete:A_BomoBR_DN29892_c6_g1_i2
566bp
 venom_carboxylesterase-6-like_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
1404 O_BomoBR101264_complete:A_BomoBR_DN29892_c6_g1_i3
358bp
 venom_carboxylesterase-6-like_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
1405 O_BomoBR101265_3prime_partial:A_BomoBR_DN29892_c7_g1_i1
157bp
 mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
1406 O_BomoBR101266_3prime_partial:A_BomoBR_DN29892_c7_g1_i3
118bp
 mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
1407 O_BomoBR101267_complete:A_BomoBR_DN29892_c7_g1_i5
102bp
1408 O_BomoBR101268_3prime_partial:A_BomoBR_DN29892_c7_g1_i6
157bp
 mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
1409 O_BomoBR101269_3prime_partial:A_BomoBR_DN29892_c7_g1_i7
318bp
 mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
1410 O_BomoBR10126_3prime_partial:A_BomoBR_DN31333_c3_g1_i2
971bp
 titin_isoform_X1_[Bombyx_mori]
previous next from show/103968

- SilkBase 1999-2023 -