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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4411 O_BomoOtmSK13971_complete:A_BomoOtmSK_comp14841_c0_seq1
119bp
4412 O_BomoOtmSK13972_5prime_partial:A_BomoOtmSK_comp14841_c0_seq3
584bp
 TBC1_domain_family_member_1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0032880 P regulation of protein localization
GO:0061024 P membrane organization
GO:0090630 P activation of GTPase activity
4413 O_BomoOtmSK13973_complete:A_BomoOtmSK_comp14841_c0_seq3
119bp
4414 O_BomoOtmSK13974_internal:A_BomoOtmSK_comp14841_c0_seq4
231bp
 TBC1_domain_family_member_1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0032880 P regulation of protein localization
GO:0061024 P membrane organization
GO:0090630 P activation of GTPase activity
4415 O_BomoOtmSK13975_complete:A_BomoOtmSK_comp14841_c0_seq5
307bp
 TBC1_domain_family_member_1_[Bombyx_mori]
4416 O_BomoOtmSK13976_5prime_partial:A_BomoOtmSK_comp14841_c0_seq5
155bp
4417 O_BomoOtmSK13977_complete:A_BomoOtmSK_comp14841_c0_seq5
119bp
4418 O_BomoOtmSK13978_complete:A_BomoOtmSK_comp14842_c0_seq1
411bp
 uncharacterized_protein_LOC101742436_isoform_X1_[Bombyx_mori]
4419 O_BomoOtmSK13979_complete:A_BomoOtmSK_comp14842_c0_seq1
256bp
4420 O_BomoOtmSK1397_5prime_partial:A_BomoOtmSK_comp4947_c0_seq1
100bp
 lysosomal-trafficking_regulator_[Bombyx_mori]
4421 O_BomoOtmSK13980_complete:A_BomoOtmSK_comp14842_c0_seq1
208bp
 clathrin_light_chain_isoform_X2_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0016192 P vesicle-mediated transport
GO:0019233 P sensory perception of pain
GO:0030125 C clathrin vesicle coat
GO:0030130 C clathrin coat of trans-Golgi network vesicle
GO:0030132 C clathrin coat of coated pit
GO:0030135 C coated vesicle
GO:0030136 C clathrin-coated vesicle
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032050 F clathrin heavy chain binding
GO:0071439 C clathrin complex
GO:0072583 P clathrin-dependent endocytosis
GO:0072686 C mitotic spindle
4422 O_BomoOtmSK13981_5prime_partial:A_BomoOtmSK_comp14842_c0_seq1
145bp
4423 O_BomoOtmSK13982_complete:A_BomoOtmSK_comp14842_c0_seq2
353bp
 uncharacterized_protein_LOC101742436_isoform_X2_[Bombyx_mori]
4424 O_BomoOtmSK13983_complete:A_BomoOtmSK_comp14842_c0_seq2
256bp
4425 O_BomoOtmSK13984_complete:A_BomoOtmSK_comp14842_c0_seq2
208bp
 clathrin_light_chain_isoform_X2_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0016192 P vesicle-mediated transport
GO:0019233 P sensory perception of pain
GO:0030125 C clathrin vesicle coat
GO:0030130 C clathrin coat of trans-Golgi network vesicle
GO:0030132 C clathrin coat of coated pit
GO:0030135 C coated vesicle
GO:0030136 C clathrin-coated vesicle
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032050 F clathrin heavy chain binding
GO:0071439 C clathrin complex
GO:0072583 P clathrin-dependent endocytosis
GO:0072686 C mitotic spindle
4426 O_BomoOtmSK13985_complete:A_BomoOtmSK_comp14846_c0_seq1
763bp
 hydroxyacyl-coenzyme_A_dehydrogenase_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003824 F catalytic activity
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0003985 F acetyl-CoA C-acetyltransferase activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0004300 F enoyl-CoA hydratase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016507 C mitochondrial fatty acid beta-oxidation multienzyme complex
GO:0016508 F long-chain-enoyl-CoA hydratase activity
GO:0016509 F long-chain-3-hydroxyacyl-CoA dehydrogenase activity
GO:0016829 F lyase activity
GO:0032403 F protein-containing complex binding
GO:0032868 P response to insulin
GO:0035965 P cardiolipin acyl-chain remodeling
GO:0042493 P response to xenobiotic stimulus
GO:0042645 C mitochondrial nucleoid
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
4427 O_BomoOtmSK13986_complete:A_BomoOtmSK_comp14846_c0_seq1
145bp
 hypothetical_protein_PAJ_1983_[Pantoea_ananatis_AJ13355]
4428 O_BomoOtmSK13987_complete:A_BomoOtmSK_comp14847_c0_seq1
854bp
 protein_suppressor_of_white_apricot_isoform_X1_[Bombyx_mori]
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
4429 O_BomoOtmSK13988_complete:A_BomoOtmSK_comp14847_c0_seq1
103bp
4430 O_BomoOtmSK13989_5prime_partial:A_BomoOtmSK_comp14847_c0_seq2
123bp
 splicing_factor,_suppressor_of_white-apricot_homolog_isoform_X2_[Bombyx_mori]
4431 O_BomoOtmSK1398_5prime_partial:A_BomoOtmSK_comp4948_c0_seq1
139bp
 protein_tramtrack,_beta_isoform-like_isoform_X7_[Helicoverpa_armigera]
4432 O_BomoOtmSK13990_3prime_partial:A_BomoOtmSK_comp14847_c0_seq3
745bp
 protein_suppressor_of_white_apricot_isoform_X1_[Bombyx_mori]
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
4433 O_BomoOtmSK13991_complete:A_BomoOtmSK_comp14848_c0_seq1
542bp
 eukaryotic_translation_initiation_factor_3_subunit_L_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
4434 O_BomoOtmSK13992_complete:A_BomoOtmSK_comp14848_c0_seq1
100bp
4435 O_BomoOtmSK13993_5prime_partial:A_BomoOtmSK_comp14850_c0_seq1
683bp
 tudor_domain-containing_protein_3-like_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0016568 P chromatin organization
GO:0035064 F methylated histone binding
GO:0035145 C exon-exon junction complex
GO:1903506 P regulation of nucleic acid-templated transcription
4436 O_BomoOtmSK13994_complete:A_BomoOtmSK_comp14850_c0_seq1
121bp
4437 O_BomoOtmSK13995_3prime_partial:A_BomoOtmSK_comp14851_c0_seq1
448bp
 nuclear_pore_complex_protein_Nup160_homolog_[Helicoverpa_armigera]
GO:0000724 P double-strand break repair via homologous recombination
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
4438 O_BomoOtmSK13996_internal:A_BomoOtmSK_comp14852_c0_seq3
105bp
 uncharacterized_protein_LOC105841508_[Bombyx_mori]
4439 O_BomoOtmSK13997_3prime_partial:A_BomoOtmSK_comp14853_c0_seq1
149bp
 inositol_hexakisphosphate_kinase_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000832 F inositol hexakisphosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006817 P phosphate ion transport
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030308 P negative regulation of cell growth
GO:0043065 P positive regulation of apoptotic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0052723 F inositol hexakisphosphate 1-kinase activity
GO:0052724 F inositol hexakisphosphate 3-kinase activity
4440 O_BomoOtmSK13998_5prime_partial:A_BomoOtmSK_comp14853_c0_seq1
106bp
 hypothetical_protein_I79_006644_[Cricetulus_griseus]
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