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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
271 O_BomoOtmSK10244_complete:A_BomoOtmSK_comp13462_c0_seq5
183bp
272 O_BomoOtmSK10245_complete:A_BomoOtmSK_comp13462_c0_seq5
169bp
273 O_BomoOtmSK10246_complete:A_BomoOtmSK_comp13462_c0_seq5
126bp
274 O_BomoOtmSK10247_complete:A_BomoOtmSK_comp13462_c0_seq5
109bp
275 O_BomoOtmSK10248_complete:A_BomoOtmSK_comp13462_c0_seq6
2337bp
 mucin-17_isoform_X9_[Bombyx_mori]
276 O_BomoOtmSK10249_complete:A_BomoOtmSK_comp13462_c0_seq6
183bp
277 O_BomoOtmSK1024_complete:A_BomoOtmSK_comp4448_c0_seq1
907bp
 glutamate_receptor_ionotropic,_kainate_2_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0007268 P chemical synaptic transmission
GO:0008066 F glutamate receptor activity
GO:0008328 C ionotropic glutamate receptor complex
GO:0014069 C postsynaptic density
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019228 P neuronal action potential
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032839 C dendrite cytoplasm
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043113 P receptor clustering
GO:0043195 C terminal bouton
GO:0043204 C perikaryon
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046328 P regulation of JNK cascade
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050804 P modulation of chemical synaptic transmission
GO:0050806 P positive regulation of synaptic transmission
GO:0051402 P neuron apoptotic process
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
278 O_BomoOtmSK10250_complete:A_BomoOtmSK_comp13462_c0_seq6
169bp
279 O_BomoOtmSK10251_complete:A_BomoOtmSK_comp13462_c0_seq6
126bp
280 O_BomoOtmSK10252_complete:A_BomoOtmSK_comp13462_c0_seq6
109bp
281 O_BomoOtmSK10253_complete:A_BomoOtmSK_comp13462_c0_seq6
100bp
282 O_BomoOtmSK10254_3prime_partial:A_BomoOtmSK_comp13462_c0_seq7
2286bp
 mucin-17_isoform_X9_[Bombyx_mori]
283 O_BomoOtmSK10255_complete:A_BomoOtmSK_comp13462_c0_seq7
183bp
284 O_BomoOtmSK10256_complete:A_BomoOtmSK_comp13462_c0_seq7
169bp
285 O_BomoOtmSK10257_complete:A_BomoOtmSK_comp13462_c0_seq7
126bp
286 O_BomoOtmSK10258_complete:A_BomoOtmSK_comp13462_c0_seq7
109bp
287 O_BomoOtmSK10259_3prime_partial:A_BomoOtmSK_comp13462_c0_seq8
2358bp
 mucin-17_isoform_X4_[Bombyx_mori]
288 O_BomoOtmSK1025_complete:A_BomoOtmSK_comp4448_c0_seq1
109bp
289 O_BomoOtmSK10260_complete:A_BomoOtmSK_comp13462_c0_seq8
183bp
290 O_BomoOtmSK10261_complete:A_BomoOtmSK_comp13462_c0_seq8
169bp
291 O_BomoOtmSK10262_complete:A_BomoOtmSK_comp13462_c0_seq8
126bp
292 O_BomoOtmSK10263_complete:A_BomoOtmSK_comp13462_c0_seq8
109bp
293 O_BomoOtmSK10264_5prime_partial:A_BomoOtmSK_comp13463_c0_seq1
217bp
 zinc_finger_protein_2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
294 O_BomoOtmSK10265_complete:A_BomoOtmSK_comp13464_c0_seq1
158bp
 U1_small_nuclear_ribonucleoprotein_70_kDa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
295 O_BomoOtmSK10266_complete:A_BomoOtmSK_comp13464_c0_seq1
104bp
296 O_BomoOtmSK10267_3prime_partial:A_BomoOtmSK_comp13464_c0_seq2
165bp
 U1_small_nuclear_ribonucleoprotein_70_kDa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
297 O_BomoOtmSK10268_complete:A_BomoOtmSK_comp13465_c0_seq1
537bp
 eukaryotic_initiation_factor_4B_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0001731 P formation of translation preinitiation complex
GO:0002181 P cytoplasmic translation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005844 C polysome
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0033592 F RNA strand annealing activity
GO:0034057 F RNA strand-exchange activity
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0097010 P eukaryotic translation initiation factor 4F complex assembly
298 O_BomoOtmSK10269_complete:A_BomoOtmSK_comp13465_c0_seq1
153bp
299 O_BomoOtmSK1026_complete:A_BomoOtmSK_comp4449_c0_seq1
283bp
 uncharacterized_protein_LOC101739653_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005816 C spindle pole body
GO:0005819 C spindle
GO:0005935 C cellular bud neck
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010696 P positive regulation of mitotic spindle pole body separation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0032888 P regulation of mitotic spindle elongation
GO:0035308 P negative regulation of protein dephosphorylation
GO:0051301 P cell division
300 O_BomoOtmSK10270_3prime_partial:A_BomoOtmSK_comp13465_c0_seq1
101bp
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