SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2341 O_BomoOtmSK12107_complete:A_BomoOtmSK_comp14199_c0_seq4
221bp
 UPF0598_protein_CG30010_[Bombyx_mori]
2342 O_BomoOtmSK12108_5prime_partial:A_BomoOtmSK_comp14199_c0_seq4
102bp
 protein_crossbronx_homolog_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0045022 P early endosome to late endosome transport
GO:0070695 C FHF complex
2343 O_BomoOtmSK12109_complete:A_BomoOtmSK_comp14199_c0_seq5
231bp
 protein_crossbronx_homolog_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
2344 O_BomoOtmSK1210_5prime_partial:A_BomoOtmSK_comp4756_c0_seq1
359bp
2345 O_BomoOtmSK12110_complete:A_BomoOtmSK_comp14199_c0_seq5
221bp
 UPF0598_protein_CG30010_[Bombyx_mori]
2346 O_BomoOtmSK12111_complete:A_BomoOtmSK_comp14199_c0_seq6
231bp
 protein_crossbronx_homolog_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
2347 O_BomoOtmSK12112_3prime_partial:A_BomoOtmSK_comp14200_c0_seq1
453bp
 probable_phospholipid-transporting_ATPase_IM_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
2348 O_BomoOtmSK12113_3prime_partial:A_BomoOtmSK_comp14200_c0_seq2
453bp
 probable_phospholipid-transporting_ATPase_IM_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
2349 O_BomoOtmSK12114_internal:A_BomoOtmSK_comp14200_c0_seq3
517bp
 probable_phospholipid-transporting_ATPase_IM_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
2350 O_BomoOtmSK12115_internal:A_BomoOtmSK_comp14201_c0_seq1
268bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2351 O_BomoOtmSK12116_5prime_partial:A_BomoOtmSK_comp14202_c0_seq3
111bp
 uncharacterized_protein_LOC101741349_isoform_X5_[Bombyx_mori]
2352 O_BomoOtmSK12117_complete:A_BomoOtmSK_comp14204_c0_seq1
351bp
 DDB1-_and_CUL4-associated_factor_12_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
2353 O_BomoOtmSK12118_complete:A_BomoOtmSK_comp14204_c0_seq1
110bp
2354 O_BomoOtmSK12119_3prime_partial:A_BomoOtmSK_comp14205_c0_seq1
451bp
 casein_kinase_I_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
2355 O_BomoOtmSK1211_3prime_partial:A_BomoOtmSK_comp4756_c0_seq2
376bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
2356 O_BomoOtmSK12120_complete:A_BomoOtmSK_comp14205_c0_seq1
113bp
2357 O_BomoOtmSK12121_complete:A_BomoOtmSK_comp14205_c0_seq1
108bp
2358 O_BomoOtmSK12122_3prime_partial:A_BomoOtmSK_comp14205_c0_seq2
451bp
 casein_kinase_I_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
2359 O_BomoOtmSK12123_complete:A_BomoOtmSK_comp14205_c0_seq2
113bp
2360 O_BomoOtmSK12124_complete:A_BomoOtmSK_comp14205_c0_seq2
108bp
2361 O_BomoOtmSK12125_5prime_partial:A_BomoOtmSK_comp14206_c0_seq1
219bp
 uncharacterized_protein_LOC101743303_[Bombyx_mori]
2362 O_BomoOtmSK12126_5prime_partial:A_BomoOtmSK_comp14206_c0_seq2
2187bp
 uncharacterized_protein_LOC101743303_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0016020 C membrane
GO:0031225 C anchored component of membrane
GO:0031514 C motile cilium
GO:0042995 C cell projection
2363 O_BomoOtmSK12127_complete:A_BomoOtmSK_comp14208_c0_seq1
650bp
 TBC1_domain_family_member_15_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
2364 O_BomoOtmSK12128_complete:A_BomoOtmSK_comp14208_c0_seq1
104bp
2365 O_BomoOtmSK12129_complete:A_BomoOtmSK_comp14208_c0_seq2
661bp
 TBC1_domain_family_member_15_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
2366 O_BomoOtmSK1212_5prime_partial:A_BomoOtmSK_comp4756_c0_seq2
359bp
2367 O_BomoOtmSK12130_complete:A_BomoOtmSK_comp14208_c0_seq2
104bp
2368 O_BomoOtmSK12131_complete:A_BomoOtmSK_comp14208_c0_seq3
633bp
 TBC1_domain_family_member_15_isoform_X3_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043087 P regulation of GTPase activity
GO:0070062 C extracellular exosome
GO:0090630 P activation of GTPase activity
2369 O_BomoOtmSK12132_complete:A_BomoOtmSK_comp14208_c0_seq3
104bp
2370 O_BomoOtmSK12133_complete:A_BomoOtmSK_comp14209_c0_seq1
249bp
 GDP-fucose_transporter_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005456 F CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005457 F GDP-fucose transmembrane transporter activity
GO:0005458 F GDP-mannose transmembrane transporter activity
GO:0005459 F UDP-galactose transmembrane transporter activity
GO:0005460 F UDP-glucose transmembrane transporter activity
GO:0005461 F UDP-glucuronic acid transmembrane transporter activity
GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity
GO:0005463 F UDP-N-acetylgalactosamine transmembrane transporter activity
GO:0005794 C Golgi apparatus
GO:0005798 C Golgi-associated vesicle
GO:0006810 P transport
GO:0007625 P grooming behavior
GO:0008643 P carbohydrate transport
GO:0015782 P CMP-N-acetylneuraminate transmembrane transport
GO:0015783 P GDP-fucose transmembrane transport
GO:0015784 P GDP-mannose transmembrane transport
GO:0015785 P UDP-galactose transmembrane transport
GO:0015786 P UDP-glucose transmembrane transport
GO:0015787 P UDP-glucuronic acid transmembrane transport
GO:0015788 P UDP-N-acetylglucosamine transmembrane transport
GO:0015789 P UDP-N-acetylgalactosamine transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0036066 P protein O-linked fucosylation
GO:0036071 P N-glycan fucosylation
GO:0036085 P GDP-fucose import into Golgi lumen
GO:0048193 P Golgi vesicle transport
previous next from show/35878

- SilkBase 1999-2023 -