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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1711 O_BomoOtmSK11540_complete:A_BomoOtmSK_comp13949_c0_seq1
529bp
 amino_acid_transporter_[Danaus_plexippus_plexippus]
GO:0003333 P amino acid transmembrane transport
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
1712 O_BomoOtmSK11541_complete:A_BomoOtmSK_comp13949_c0_seq1
106bp
1713 O_BomoOtmSK11542_complete:A_BomoOtmSK_comp13950_c1_seq2
808bp
 mannosyl-oligosaccharide_glucosidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004558 F alpha-1,4-glucosidase activity
GO:0004573 F Glc3Man9GlcNAc2 oligosaccharide glucosidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006487 P protein N-linked glycosylation
GO:0008152 P metabolic process
GO:0009311 P oligosaccharide metabolic process
GO:0009913 P epidermal cell differentiation
GO:0010053 P root epidermal cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
1714 O_BomoOtmSK11543_complete:A_BomoOtmSK_comp13950_c1_seq2
110bp
1715 O_BomoOtmSK11544_complete:A_BomoOtmSK_comp13951_c0_seq1
293bp
 nuclear_transcription_factor_Y_subunit_alpha_isoform_X2_[Bombyx_mori]
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0032993 C protein-DNA complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
1716 O_BomoOtmSK11545_complete:A_BomoOtmSK_comp13952_c1_seq1
418bp
 pyruvate_dehydrogenase_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004740 F pyruvate dehydrogenase (acetyl-transferring) kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006090 P pyruvate metabolic process
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
1717 O_BomoOtmSK11546_complete:A_BomoOtmSK_comp13953_c0_seq1
714bp
 DNA_mismatch_repair_protein_Mlh1_isoform_X1_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0001673 C male germ cell nucleus
GO:0002204 P somatic recombination of immunoglobulin genes involved in immune response
GO:0003682 F chromatin binding
GO:0003697 F single-stranded DNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005712 C chiasma
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007060 P male meiosis chromosome segregation
GO:0007126 P meiotic cell cycle
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007131 P reciprocal meiotic recombination
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 C membrane
GO:0016321 P female meiosis chromosome segregation
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0043060 P meiotic metaphase I plate congression
GO:0045132 P meiotic chromosome segregation
GO:0045141 P meiotic telomere clustering
GO:0045143 P homologous chromosome segregation
GO:0045190 P isotype switching
GO:0045950 P negative regulation of mitotic recombination
GO:0048477 P oogenesis
GO:0051257 P meiotic spindle midzone assembly
1718 O_BomoOtmSK11547_5prime_partial:A_BomoOtmSK_comp13953_c0_seq1
126bp
1719 O_BomoOtmSK11548_complete:A_BomoOtmSK_comp13953_c0_seq2
615bp
 DNA_mismatch_repair_protein_Mlh1_isoform_X2_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0001673 C male germ cell nucleus
GO:0002204 P somatic recombination of immunoglobulin genes involved in immune response
GO:0003682 F chromatin binding
GO:0003697 F single-stranded DNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005712 C chiasma
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007060 P male meiosis chromosome segregation
GO:0007126 P meiotic cell cycle
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007131 P reciprocal meiotic recombination
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 C membrane
GO:0016321 P female meiosis chromosome segregation
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0043060 P meiotic metaphase I plate congression
GO:0045132 P meiotic chromosome segregation
GO:0045141 P meiotic telomere clustering
GO:0045143 P homologous chromosome segregation
GO:0045190 P isotype switching
GO:0045950 P negative regulation of mitotic recombination
GO:0048477 P oogenesis
GO:0051257 P meiotic spindle midzone assembly
1720 O_BomoOtmSK11549_5prime_partial:A_BomoOtmSK_comp13953_c0_seq2
126bp
1721 O_BomoOtmSK1154_complete:A_BomoOtmSK_comp4664_c0_seq1
301bp
1722 O_BomoOtmSK11550_complete:A_BomoOtmSK_comp13953_c0_seq2
118bp
 DNA_mismatch_repair_protein_Mlh1_isoform_X1_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0001673 C male germ cell nucleus
GO:0002204 P somatic recombination of immunoglobulin genes involved in immune response
GO:0003682 F chromatin binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005712 C chiasma
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007060 P male meiosis chromosome segregation
GO:0007126 P meiotic cell cycle
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007131 P reciprocal meiotic recombination
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 C membrane
GO:0016321 P female meiosis chromosome segregation
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0043060 P meiotic metaphase I plate congression
GO:0045132 P meiotic chromosome segregation
GO:0045141 P meiotic telomere clustering
GO:0045143 P homologous chromosome segregation
GO:0045190 P isotype switching
GO:0045950 P negative regulation of mitotic recombination
GO:0048477 P oogenesis
GO:0051257 P meiotic spindle midzone assembly
1723 O_BomoOtmSK11551_complete:A_BomoOtmSK_comp13954_c0_seq1
582bp
 RNA_pseudouridylate_synthase_domain-containing_protein_2_isoform_X4_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0044822 F RNA binding
1724 O_BomoOtmSK11552_complete:A_BomoOtmSK_comp13954_c0_seq1
164bp
1725 O_BomoOtmSK11553_complete:A_BomoOtmSK_comp13954_c0_seq1
100bp
1726 O_BomoOtmSK11554_internal:A_BomoOtmSK_comp13955_c0_seq1
110bp
 E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
1727 O_BomoOtmSK11555_3prime_partial:A_BomoOtmSK_comp13955_c1_seq1
398bp
 E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035264 P multicellular organism growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0061053 P somite development
GO:0061630 F ubiquitin protein ligase activity
1728 O_BomoOtmSK11556_internal:A_BomoOtmSK_comp13955_c1_seq2
125bp
 E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
1729 O_BomoOtmSK11557_3prime_partial:A_BomoOtmSK_comp13955_c1_seq3
423bp
 E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035264 P multicellular organism growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0061053 P somite development
GO:0061630 F ubiquitin protein ligase activity
1730 O_BomoOtmSK11558_3prime_partial:A_BomoOtmSK_comp13956_c0_seq1
848bp
 uncharacterized_protein_LOC101737934_isoform_X1_[Bombyx_mori]
GO:0005328 F neurotransmitter:sodium symporter activity
GO:0005332 F gamma-aminobutyric acid:sodium symporter activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0007612 P learning
GO:0009636 P response to toxic substance
GO:0009744 P response to sucrose
GO:0009986 C cell surface
GO:0010033 P response to organic substance
GO:0010243 P response to organonitrogen compound
GO:0010288 P response to lead ion
GO:0014054 P positive regulation of gamma-aminobutyric acid secretion
GO:0014070 P response to organic cyclic compound
GO:0014074 P response to purine-containing compound
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030424 C axon
GO:0032229 P negative regulation of synaptic transmission, GABAergic
GO:0032355 P response to estradiol
GO:0042220 P response to cocaine
GO:0043005 C neuron projection
GO:0046872 F metal ion binding
GO:0051260 P protein homooligomerization
GO:0051592 P response to calcium ion
GO:0051939 P gamma-aminobutyric acid import
GO:0055085 P transmembrane transport
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
1731 O_BomoOtmSK11559_3prime_partial:A_BomoOtmSK_comp13957_c0_seq1
200bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
1732 O_BomoOtmSK1155_complete:A_BomoOtmSK_comp4664_c0_seq1
218bp
 putative_synaptobrevin_[Danaus_plexippus_plexippus]
1733 O_BomoOtmSK11560_3prime_partial:A_BomoOtmSK_comp13957_c0_seq2
200bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
1734 O_BomoOtmSK11561_3prime_partial:A_BomoOtmSK_comp13957_c0_seq3
200bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
1735 O_BomoOtmSK11562_complete:A_BomoOtmSK_comp13958_c0_seq1
350bp
 sodium-coupled_monocarboxylate_transporter_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006915 P apoptotic process
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0022803 F passive transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
1736 O_BomoOtmSK11563_complete:A_BomoOtmSK_comp13958_c0_seq1
103bp
1737 O_BomoOtmSK11564_complete:A_BomoOtmSK_comp13958_c0_seq2
366bp
 sodium-coupled_monocarboxylate_transporter_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006915 P apoptotic process
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0022803 F passive transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
1738 O_BomoOtmSK11565_complete:A_BomoOtmSK_comp13958_c0_seq2
244bp
 sodium-coupled_monocarboxylate_transporter_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005634 C nucleus
GO:0005887 C integral component of plasma membrane
GO:0006590 P thyroid hormone generation
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0008507 F sodium:iodide symporter activity
GO:0015111 F iodide transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015705 P iodide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035725 P sodium ion transmembrane transport
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:0098656 P anion transmembrane transport
GO:1903561 C extracellular vesicle
1739 O_BomoOtmSK11566_complete:A_BomoOtmSK_comp13958_c0_seq2
147bp
1740 O_BomoOtmSK11567_complete:A_BomoOtmSK_comp13958_c0_seq2
103bp
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