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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1591 O_BomoOtmSK11432_complete:A_BomoOtmSK_comp13912_c0_seq2
156bp
1592 O_BomoOtmSK11433_complete:A_BomoOtmSK_comp13912_c0_seq2
120bp
1593 O_BomoOtmSK11434_3prime_partial:A_BomoOtmSK_comp13912_c0_seq3
1136bp
 nesprin-1_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
1594 O_BomoOtmSK11435_5prime_partial:A_BomoOtmSK_comp13912_c0_seq3
222bp
1595 O_BomoOtmSK11436_complete:A_BomoOtmSK_comp13912_c0_seq3
156bp
1596 O_BomoOtmSK11437_complete:A_BomoOtmSK_comp13912_c0_seq3
120bp
1597 O_BomoOtmSK11438_3prime_partial:A_BomoOtmSK_comp13912_c0_seq4
1136bp
 nesprin-1_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
1598 O_BomoOtmSK11439_5prime_partial:A_BomoOtmSK_comp13912_c0_seq4
222bp
1599 O_BomoOtmSK1143_3prime_partial:A_BomoOtmSK_comp4645_c0_seq2
293bp
 poly(A)_RNA_polymerase_gld-2_homolog_A_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001556 P oocyte maturation
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0007017 P microtubule-based process
GO:0007052 P mitotic spindle organization
GO:0007056 P spindle assembly involved in female meiosis
GO:0007343 P egg activation
GO:0007344 P pronuclear fusion
GO:0008298 P intracellular mRNA localization
GO:0016740 F transferase activity
GO:0035044 P sperm aster formation
GO:0035046 P pronuclear migration
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
1600 O_BomoOtmSK11440_complete:A_BomoOtmSK_comp13912_c0_seq4
156bp
1601 O_BomoOtmSK11441_complete:A_BomoOtmSK_comp13912_c0_seq4
120bp
1602 O_BomoOtmSK11442_internal:A_BomoOtmSK_comp13912_c0_seq5
3930bp
 uncharacterized_protein_LOC110381285_isoform_X2_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
1603 O_BomoOtmSK11443_5prime_partial:A_BomoOtmSK_comp13912_c0_seq5
222bp
1604 O_BomoOtmSK11444_complete:A_BomoOtmSK_comp13912_c0_seq5
156bp
1605 O_BomoOtmSK11445_complete:A_BomoOtmSK_comp13912_c0_seq5
133bp
1606 O_BomoOtmSK11446_complete:A_BomoOtmSK_comp13912_c0_seq5
131bp
1607 O_BomoOtmSK11447_complete:A_BomoOtmSK_comp13912_c0_seq5
119bp
1608 O_BomoOtmSK11448_complete:A_BomoOtmSK_comp13912_c0_seq5
101bp
1609 O_BomoOtmSK11449_3prime_partial:A_BomoOtmSK_comp13912_c0_seq6
1149bp
 nesprin-1_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
1610 O_BomoOtmSK1144_5prime_partial:A_BomoOtmSK_comp4645_c0_seq2
110bp
1611 O_BomoOtmSK11450_5prime_partial:A_BomoOtmSK_comp13912_c0_seq6
235bp
1612 O_BomoOtmSK11451_complete:A_BomoOtmSK_comp13912_c0_seq6
156bp
1613 O_BomoOtmSK11452_complete:A_BomoOtmSK_comp13912_c0_seq6
120bp
1614 O_BomoOtmSK11453_internal:A_BomoOtmSK_comp13913_c0_seq1
184bp
 cryptochrome_1_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005641 C nuclear envelope lumen
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009785 P blue light signaling pathway
GO:0009881 F photoreceptor activity
GO:0009882 F blue light photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042752 P regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050896 P response to stimulus
1615 O_BomoOtmSK11454_3prime_partial:A_BomoOtmSK_comp13913_c1_seq1
163bp
 cryptochrome_1_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005641 C nuclear envelope lumen
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009785 P blue light signaling pathway
GO:0009881 F photoreceptor activity
GO:0009882 F blue light photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042752 P regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050896 P response to stimulus
1616 O_BomoOtmSK11455_5prime_partial:A_BomoOtmSK_comp13913_c1_seq1
142bp
 hypothetical_protein_RR46_14360_[Papilio_xuthus]
1617 O_BomoOtmSK11456_complete:A_BomoOtmSK_comp13914_c0_seq1
463bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
1618 O_BomoOtmSK11457_complete:A_BomoOtmSK_comp13915_c0_seq1
776bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
1619 O_BomoOtmSK11458_complete:A_BomoOtmSK_comp13915_c0_seq2
760bp
 LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
1620 O_BomoOtmSK11459_5prime_partial:A_BomoOtmSK_comp13916_c0_seq1
299bp
 UPF0415_protein_C7orf25_homolog_[Bombyx_mori]
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