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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1381 O_BomoOtmSK11243_complete:A_BomoOtmSK_comp13854_c0_seq1
1372bp
 PREDICTED:_RRP12-like_protein_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0048812 P neuron projection morphogenesis
1382 O_BomoOtmSK11244_complete:A_BomoOtmSK_comp13854_c0_seq1
153bp
1383 O_BomoOtmSK11245_complete:A_BomoOtmSK_comp13854_c0_seq1
120bp
1384 O_BomoOtmSK11246_complete:A_BomoOtmSK_comp13854_c0_seq1
113bp
1385 O_BomoOtmSK11247_complete:A_BomoOtmSK_comp13854_c0_seq1
112bp
1386 O_BomoOtmSK11248_complete:A_BomoOtmSK_comp13854_c0_seq1
110bp
1387 O_BomoOtmSK11249_complete:A_BomoOtmSK_comp13854_c0_seq1
105bp
1388 O_BomoOtmSK1124_complete:A_BomoOtmSK_comp4624_c0_seq1
225bp
1389 O_BomoOtmSK11250_complete:A_BomoOtmSK_comp13855_c0_seq1
147bp
 uncharacterized_protein_LOC106123913_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0051028 P mRNA transport
GO:0070062 C extracellular exosome
1390 O_BomoOtmSK11251_complete:A_BomoOtmSK_comp13855_c0_seq1
106bp
1391 O_BomoOtmSK11252_complete:A_BomoOtmSK_comp13855_c0_seq2
177bp
 arginine/serine-rich_splicing_factor_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0051028 P mRNA transport
GO:0070062 C extracellular exosome
1392 O_BomoOtmSK11253_complete:A_BomoOtmSK_comp13855_c0_seq2
104bp
1393 O_BomoOtmSK11254_complete:A_BomoOtmSK_comp13855_c0_seq3
147bp
 uncharacterized_protein_LOC106123913_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0051028 P mRNA transport
GO:0070062 C extracellular exosome
1394 O_BomoOtmSK11255_complete:A_BomoOtmSK_comp13855_c0_seq3
106bp
1395 O_BomoOtmSK11256_complete:A_BomoOtmSK_comp13857_c0_seq1
625bp
 laccase-2_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0046274 P lignin catabolic process
GO:0046872 F metal ion binding
GO:0052716 F hydroquinone:oxygen oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
1396 O_BomoOtmSK11257_complete:A_BomoOtmSK_comp13858_c0_seq1
918bp
 periodic_tryptophan_protein_2_homolog_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
1397 O_BomoOtmSK11258_complete:A_BomoOtmSK_comp13858_c0_seq1
159bp
1398 O_BomoOtmSK11259_complete:A_BomoOtmSK_comp13858_c0_seq1
107bp
1399 O_BomoOtmSK1125_5prime_partial:A_BomoOtmSK_comp4624_c0_seq1
115bp
 ribosome_biogenesis_ATPase_RIX7_[Candida_tropicalis_MYA-3404]
1400 O_BomoOtmSK11260_5prime_partial:A_BomoOtmSK_comp13858_c0_seq1
103bp
1401 O_BomoOtmSK11261_3prime_partial:A_BomoOtmSK_comp13861_c0_seq1
1097bp
 phosphatidylinositol_4-kinase_alpha_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004430 F 1-phosphatidylinositol 4-kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030660 C Golgi-associated vesicle membrane
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
1402 O_BomoOtmSK11262_complete:A_BomoOtmSK_comp13861_c0_seq1
237bp
1403 O_BomoOtmSK11263_complete:A_BomoOtmSK_comp13861_c0_seq1
156bp
1404 O_BomoOtmSK11264_complete:A_BomoOtmSK_comp13861_c0_seq1
135bp
1405 O_BomoOtmSK11265_5prime_partial:A_BomoOtmSK_comp13862_c0_seq1
211bp
1406 O_BomoOtmSK11266_3prime_partial:A_BomoOtmSK_comp13862_c0_seq2
176bp
 U1_small_nuclear_ribonucleoprotein_70_kDa_isoform_X3_[Bombyx_mori]
1407 O_BomoOtmSK11267_5prime_partial:A_BomoOtmSK_comp13862_c0_seq2
168bp
1408 O_BomoOtmSK11268_5prime_partial:A_BomoOtmSK_comp13862_c0_seq3
104bp
1409 O_BomoOtmSK11269_3prime_partial:A_BomoOtmSK_comp13862_c0_seq5
209bp
 arginine/serine-rich_coiled-coil_protein_2_isoform_X2_[Bombyx_mori]
1410 O_BomoOtmSK1126_5prime_partial:A_BomoOtmSK_comp4631_c0_seq1
456bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0046982 F protein heterodimerization activity
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