SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16228
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5371 O_BomaMG18044_5prime_partial:A_BomaMG_comp25544_c0_seq1
111bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
5372 O_BomaMG18046_3prime_partial:A_BomaMG_comp25544_c0_seq2
107bp
5373 O_BomaMG18047_complete:A_BomaMG_comp25544_c1_seq1
864bp
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
5374 O_BomaMG1804_complete:A_BomaMG_comp12864_c0_seq1
986bp
PREDICTED:_DIS3-like_exonuclease_2_[Plutella_xylostella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000287 F magnesium ion binding
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004540 F ribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006364 P rRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008266 F poly(U) RNA binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010587 P miRNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019827 P stem cell population maintenance
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051306 P mitotic sister chromatid separation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 P polyuridylation-dependent mRNA catabolic process
5375 O_BomaMG18050_5prime_partial:A_BomaMG_comp25545_c1_seq1
159bp
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0006749 P glutathione metabolic process
GO:0016787 F hydrolase activity
GO:0017168 F 5-oxoprolinase (ATP-hydrolyzing) activity
5376 O_BomaMG18053_5prime_partial:A_BomaMG_comp25548_c1_seq1
496bp
5377 O_BomaMG18054_complete:A_BomaMG_comp25548_c1_seq1
271bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
5378 O_BomaMG18055_complete:A_BomaMG_comp25548_c1_seq1
206bp
5379 O_BomaMG18056_3prime_partial:A_BomaMG_comp25548_c1_seq1
174bp
5380 O_BomaMG18060_complete:A_BomaMG_comp25548_c1_seq3
854bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
5381 O_BomaMG18061_complete:A_BomaMG_comp25548_c1_seq3
100bp
5382 O_BomaMG18062_complete:A_BomaMG_comp25548_c1_seq4
271bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
5383 O_BomaMG18063_complete:A_BomaMG_comp25548_c1_seq4
206bp
5384 O_BomaMG18064_3prime_partial:A_BomaMG_comp25548_c1_seq4
174bp
5385 O_BomaMG18067_complete:A_BomaMG_comp25548_c1_seq4
100bp
5386 O_BomaMG18069_complete:A_BomaMG_comp25548_c1_seq6
193bp
GO:0000287 F magnesium ion binding
GO:0001750 C photoreceptor outer segment
GO:0001917 C photoreceptor inner segment
GO:0005178 F integrin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005927 C muscle tendon junction
GO:0005929 C cilium
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0016020 C membrane
GO:0031594 C neuromuscular junction
GO:0032403 F protein-containing complex binding
GO:0032420 C stereocilium
GO:0042383 C sarcolemma
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045494 P photoreceptor cell maintenance
GO:0046872 F metal ion binding
GO:0055074 P calcium ion homeostasis
GO:0071318 P cellular response to ATP
GO:0072562 C blood microparticle
5387 O_BomaMG18070_complete:A_BomaMG_comp25548_c1_seq7
854bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
5388 O_BomaMG18071_5prime_partial:A_BomaMG_comp25548_c1_seq7
496bp
5389 O_BomaMG18072_5prime_partial:A_BomaMG_comp25548_c1_seq8
166bp
5390 O_BomaMG18073_complete:A_BomaMG_comp25548_c1_seq8
100bp
5391 O_BomaMG18074_5prime_partial:A_BomaMG_comp25548_c1_seq9
496bp
5392 O_BomaMG18075_3prime_partial:A_BomaMG_comp25548_c1_seq9
254bp
5393 O_BomaMG18076_complete:A_BomaMG_comp25548_c1_seq11
206bp
5394 O_BomaMG18077_complete:A_BomaMG_comp25548_c1_seq11
185bp
5395 O_BomaMG18078_3prime_partial:A_BomaMG_comp25548_c1_seq11
174bp
5396 O_BomaMG1807_complete:A_BomaMG_comp12869_c0_seq1
178bp
PREDICTED:_uncharacterized_protein_LOC106107194_[Papilio_polytes]
5397 O_BomaMG18082_3prime_partial:A_BomaMG_comp25548_c1_seq12
136bp
5398 O_BomaMG18083_3prime_partial:A_BomaMG_comp25548_c1_seq14
254bp
5399 O_BomaMG18084_complete:A_BomaMG_comp25548_c1_seq14
100bp
5400 O_BomaMG18085_5prime_partial:A_BomaMG_comp25548_c1_seq15
166bp
previous next from show/16228

- SilkBase 1999-2023 -