SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16228
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4861 O_BomaMG17239_complete:A_BomaMG_comp25421_c1_seq2
931bp
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
4862 O_BomaMG17240_complete:A_BomaMG_comp25421_c1_seq5
931bp
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
4863 O_BomaMG17241_complete:A_BomaMG_comp25421_c1_seq6
942bp
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0007605 P sensory perception of sound
GO:0008270 F zinc ion binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016567 P protein ubiquitination
GO:0035246 P peptidyl-arginine N-methylation
GO:0046872 F metal ion binding
4864 O_BomaMG17242_5prime_partial:A_BomaMG_comp25422_c1_seq1
319bp
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005168 F neurotrophin TRKA receptor binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008081 F phosphoric diester hydrolase activity
GO:0008180 C COP9 signalosome
GO:0009395 P phospholipid catabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0016042 P lipid catabolic process
GO:0016477 P cell migration
GO:0016787 F hydrolase activity
GO:0019722 P calcium-mediated signaling
GO:0019901 F protein kinase binding
GO:0030027 C lamellipodium
GO:0030971 F receptor tyrosine kinase binding
GO:0035254 F glutamate receptor binding
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0043536 P positive regulation of blood vessel endothelial cell migration
GO:0045766 P positive regulation of angiogenesis
GO:0046872 F metal ion binding
GO:0050852 P T cell receptor signaling pathway
GO:0051281 P positive regulation of release of sequestered calcium ion into cytosol
GO:0071364 P cellular response to epidermal growth factor stimulus
4865 O_BomaMG17245_complete:A_BomaMG_comp25422_c3_seq1
210bp
GO:0001054 F RNA polymerase I activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0015630 C microtubule cytoskeleton
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
4866 O_BomaMG17246_complete:A_BomaMG_comp25422_c3_seq2
249bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008285 P negative regulation of cell population proliferation
GO:0046983 F protein dimerization activity
4867 O_BomaMG17248_complete:A_BomaMG_comp25422_c3_seq7
210bp
GO:0001054 F RNA polymerase I activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0015630 C microtubule cytoskeleton
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
4868 O_BomaMG17249_complete:A_BomaMG_comp25422_c3_seq8
210bp
GO:0001054 F RNA polymerase I activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0015630 C microtubule cytoskeleton
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
4869 O_BomaMG1724_complete:A_BomaMG_comp12739_c0_seq1
981bp
hypothetical_protein_RR46_12832_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
4870 O_BomaMG17251_complete:A_BomaMG_comp25422_c3_seq9
249bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008285 P negative regulation of cell population proliferation
GO:0046983 F protein dimerization activity
4871 O_BomaMG17253_complete:A_BomaMG_comp25422_c3_seq10
249bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008285 P negative regulation of cell population proliferation
GO:0046983 F protein dimerization activity
4872 O_BomaMG17255_complete:A_BomaMG_comp25422_c3_seq12
210bp
GO:0001054 F RNA polymerase I activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0015630 C microtubule cytoskeleton
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
4873 O_BomaMG17256_complete:A_BomaMG_comp25422_c3_seq13
417bp
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0002102 C podosome
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007010 P cytoskeleton organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016601 P Rac protein signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
4874 O_BomaMG17257_complete:A_BomaMG_comp25423_c0_seq1
1065bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001932 P regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0002327 P immature B cell differentiation
GO:0002904 P positive regulation of B cell apoptotic process
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0009267 P cellular response to starvation
GO:0031334 P positive regulation of protein-containing complex assembly
GO:0031929 P TOR signaling
GO:0032007 P negative regulation of TOR signaling
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:2000973 P regulation of pro-B cell differentiation
4875 O_BomaMG17259_complete:A_BomaMG_comp25423_c0_seq2
1043bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001932 P regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0002327 P immature B cell differentiation
GO:0002904 P positive regulation of B cell apoptotic process
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0009267 P cellular response to starvation
GO:0031334 P positive regulation of protein-containing complex assembly
GO:0031929 P TOR signaling
GO:0032007 P negative regulation of TOR signaling
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:2000973 P regulation of pro-B cell differentiation
4876 O_BomaMG17261_complete:A_BomaMG_comp25424_c0_seq1
497bp
GO:0001649 P osteoblast differentiation
GO:0001942 P hair follicle development
GO:0002376 P immune system process
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007623 P circadian rhythm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030282 P bone mineralization
GO:0030539 P male genitalia development
GO:0032922 P circadian regulation of gene expression
GO:0034122 P negative regulation of toll-like receptor signaling pathway
GO:0035239 P tube morphogenesis
GO:0036335 P intestinal stem cell homeostasis
GO:0045087 P innate immune response
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046849 P bone remodeling
GO:0048511 P rhythmic process
GO:0048565 P digestive tract development
GO:0050673 P epithelial cell proliferation
GO:0050710 P negative regulation of cytokine production
GO:0061290 P canonical Wnt signaling pathway involved in metanephric kidney development
GO:0072202 P cell differentiation involved in metanephros development
GO:0072224 P metanephric glomerulus development
GO:0072282 P metanephric nephron tubule morphogenesis
GO:0090190 P positive regulation of branching involved in ureteric bud morphogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:2001013 P epithelial cell proliferation involved in renal tubule morphogenesis
4877 O_BomaMG17262_complete:A_BomaMG_comp25424_c0_seq2
497bp
GO:0001649 P osteoblast differentiation
GO:0001942 P hair follicle development
GO:0002376 P immune system process
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007623 P circadian rhythm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030282 P bone mineralization
GO:0030539 P male genitalia development
GO:0032922 P circadian regulation of gene expression
GO:0034122 P negative regulation of toll-like receptor signaling pathway
GO:0035239 P tube morphogenesis
GO:0036335 P intestinal stem cell homeostasis
GO:0045087 P innate immune response
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046849 P bone remodeling
GO:0048511 P rhythmic process
GO:0048565 P digestive tract development
GO:0050673 P epithelial cell proliferation
GO:0050710 P negative regulation of cytokine production
GO:0061290 P canonical Wnt signaling pathway involved in metanephric kidney development
GO:0072202 P cell differentiation involved in metanephros development
GO:0072224 P metanephric glomerulus development
GO:0072282 P metanephric nephron tubule morphogenesis
GO:0090190 P positive regulation of branching involved in ureteric bud morphogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:2001013 P epithelial cell proliferation involved in renal tubule morphogenesis
4878 O_BomaMG17263_5prime_partial:A_BomaMG_comp25425_c0_seq1
156bp
4879 O_BomaMG17265_complete:A_BomaMG_comp25425_c2_seq1
1144bp
4880 O_BomaMG17268_complete:A_BomaMG_comp25425_c2_seq2
1144bp
4881 O_BomaMG1726_complete:A_BomaMG_comp12740_c0_seq1
219bp
PREDICTED:_uncharacterized_protein_LOC101740766_[Bombyx_mori]
GO:0005576 C extracellular region
4882 O_BomaMG17271_complete:A_BomaMG_comp25425_c2_seq4
1144bp
4883 O_BomaMG17272_complete:A_BomaMG_comp25425_c2_seq4
359bp
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4884 O_BomaMG17277_complete:A_BomaMG_comp25425_c2_seq6
1144bp
4885 O_BomaMG1727_complete:A_BomaMG_comp12743_c0_seq1
127bp
PREDICTED:_E3_ubiquitin-protein_ligase_RNF180-like_[Plutella_xylostella]
GO:0000209 P protein polyubiquitination
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030534 P adult behavior
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031398 P positive regulation of protein ubiquitination
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042428 P serotonin metabolic process
GO:0046872 F metal ion binding
GO:0050790 P regulation of catalytic activity
GO:0061630 F ubiquitin protein ligase activity
GO:1901360 P organic cyclic compound metabolic process
4886 O_BomaMG17280_complete:A_BomaMG_comp25425_c2_seq8
1144bp
4887 O_BomaMG17283_complete:A_BomaMG_comp25425_c2_seq12
359bp
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4888 O_BomaMG17286_complete:A_BomaMG_comp25425_c2_seq13
359bp
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4889 O_BomaMG17289_complete:A_BomaMG_comp25425_c2_seq14
1144bp
4890 O_BomaMG1728_5prime_partial:A_BomaMG_comp12745_c0_seq1
284bp
PREDICTED:_rRNA_2'-O-methyltransferase_fibrillarin_[Amyelois_transitella]
GO:0001651 C dense fibrillar component
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032259 P methylation
previous next from show/16228

- SilkBase 1999-2023 -