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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2221 O_BomaMG13177_complete:A_BomaMG_comp24446_c0_seq1
520bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
2222 O_BomaMG13178_complete:A_BomaMG_comp24446_c0_seq2
453bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
2223 O_BomaMG13179_complete:A_BomaMG_comp24447_c0_seq1
480bp
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2224 O_BomaMG1317_complete:A_BomaMG_comp12252_c0_seq1
326bp
PREDICTED:_UBX_domain-containing_protein_1_[Papilio_polytes]
GO:0005737 C cytoplasm
2225 O_BomaMG13180_complete:A_BomaMG_comp24447_c2_seq1
937bp
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
2226 O_BomaMG13181_3prime_partial:A_BomaMG_comp24448_c1_seq1
363bp
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
2227 O_BomaMG13182_internal:A_BomaMG_comp24449_c0_seq1
1277bp
2228 O_BomaMG13184_5prime_partial:A_BomaMG_comp24449_c1_seq1
109bp
2229 O_BomaMG13185_internal:A_BomaMG_comp24449_c2_seq1
357bp
2230 O_BomaMG13186_internal:A_BomaMG_comp24449_c3_seq1
214bp
2231 O_BomaMG13187_internal:A_BomaMG_comp24449_c4_seq1
518bp
2232 O_BomaMG13188_internal:A_BomaMG_comp24449_c5_seq1
190bp
2233 O_BomaMG13189_internal:A_BomaMG_comp24452_c0_seq1
500bp
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000975 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0040034 P regulation of development, heterochronic
GO:0045892 P negative regulation of transcription, DNA-templated
2234 O_BomaMG1318_internal:A_BomaMG_comp12253_c0_seq1
169bp
PREDICTED:_general_transcription_factor_3C_polypeptide_6-like_isoform_X2_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
2235 O_BomaMG13191_complete:A_BomaMG_comp24453_c0_seq1
380bp
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
2236 O_BomaMG13192_complete:A_BomaMG_comp24455_c1_seq1
901bp
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006865 P amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2237 O_BomaMG13195_complete:A_BomaMG_comp24456_c1_seq1
387bp
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033180 C proton-transporting V-type ATPase, V1 domain
2238 O_BomaMG13196_5prime_partial:A_BomaMG_comp24456_c2_seq1
343bp
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0008442 F 3-hydroxyisobutyrate dehydrogenase activity
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
2239 O_BomaMG13198_5prime_partial:A_BomaMG_comp24458_c0_seq1
1067bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
2240 O_BomaMG13199_5prime_partial:A_BomaMG_comp24458_c0_seq2
1071bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0031965 C nuclear membrane
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
2241 O_BomaMG1319_complete:A_BomaMG_comp12254_c0_seq1
317bp
PREDICTED:_uncharacterized_protein_LOC101736122_isoform_X1_[Bombyx_mori]
2242 O_BomaMG131_internal:A_BomaMG_comp1482_c0_seq1
121bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2243 O_BomaMG13200_3prime_partial:A_BomaMG_comp24460_c0_seq1
402bp
GO:0000022 P mitotic spindle elongation
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0030496 C midbody
GO:0030507 F spectrin binding
GO:0031175 P neuron projection development
GO:0051011 F microtubule minus-end binding
GO:0051013 P microtubule severing
2244 O_BomaMG13203_complete:A_BomaMG_comp24461_c0_seq1
280bp
2245 O_BomaMG13204_complete:A_BomaMG_comp24461_c0_seq2
280bp
2246 O_BomaMG13205_5prime_partial:A_BomaMG_comp24462_c0_seq1
514bp
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
2247 O_BomaMG13207_5prime_partial:A_BomaMG_comp24462_c0_seq2
529bp
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
2248 O_BomaMG13209_complete:A_BomaMG_comp24462_c0_seq3
515bp
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
2249 O_BomaMG1320_internal:A_BomaMG_comp12256_c0_seq1
244bp
PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0003382 P epithelial cell morphogenesis
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008584 P male gonad development
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0036098 P male germ-line stem cell population maintenance
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072520 P seminiferous tubule development
GO:0098727 P maintenance of cell number
GO:1990636 P reproductive senescence
2250 O_BomaMG13211_5prime_partial:A_BomaMG_comp24462_c0_seq4
523bp
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
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