Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
3811	O_BomaASG13430_3prime_partial:A_BomaASG_c30235_g1_i1 262bp		transcription_termination_factor,_mitochondrial_isoform_X1_[Bombyx_mori]
3812	O_BomaASG13431_3prime_partial:A_BomaASG_c30235_g1_i2 241bp		transcription_termination_factor,_mitochondrial_isoform_X2_[Bombyx_mori]
3813	O_BomaASG13432_internal:A_BomaASG_c30236_g1_i1 172bp		probable_RNA_methyltransferase_CG11342_[Bombyx_mori]	GO:0001510 P RNA methylation GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0008168 F methyltransferase activity GO:0008171 F O-methyltransferase activity GO:0008173 F RNA methyltransferase activity GO:0010586 P miRNA metabolic process GO:0016740 F transferase activity GO:0032259 P methylation GO:2000632 P negative regulation of pre-miRNA processing
3814	O_BomaASG13433_3prime_partial:A_BomaASG_c30236_g1_i2 227bp		probable_RNA_methyltransferase_CG11342_[Bombyx_mori]	GO:0008168 F methyltransferase activity GO:0016740 F transferase activity GO:0032259 P methylation
3815	O_BomaASG13434_3prime_partial:A_BomaASG_c30237_g1_i1 423bp		protein_hairless_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003714 F transcription corepressor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0007219 P Notch signaling pathway GO:0007275 P multicellular organism development GO:0008052 P sensory organ boundary specification GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0008587 P imaginal disc-derived wing margin morphogenesis GO:0010941 P regulation of cell death GO:0016360 P sensory organ precursor cell fate determination GO:0035019 P somatic stem cell population maintenance GO:0036335 P intestinal stem cell homeostasis GO:0044719 P regulation of imaginal disc-derived wing size GO:0045746 P negative regulation of Notch signaling pathway GO:0046331 P lateral inhibition GO:0048190 P wing disc dorsal/ventral pattern formation GO:1903507 P negative regulation of nucleic acid-templated transcription
3816	O_BomaASG13435_complete:A_BomaASG_c30237_g1_i1 113bp
3817	O_BomaASG13436_3prime_partial:A_BomaASG_c30237_g1_i2 423bp		protein_hairless_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003714 F transcription corepressor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0007219 P Notch signaling pathway GO:0007275 P multicellular organism development GO:0008052 P sensory organ boundary specification GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0008587 P imaginal disc-derived wing margin morphogenesis GO:0010941 P regulation of cell death GO:0016360 P sensory organ precursor cell fate determination GO:0035019 P somatic stem cell population maintenance GO:0036335 P intestinal stem cell homeostasis GO:0044719 P regulation of imaginal disc-derived wing size GO:0045746 P negative regulation of Notch signaling pathway GO:0046331 P lateral inhibition GO:0048190 P wing disc dorsal/ventral pattern formation GO:1903507 P negative regulation of nucleic acid-templated transcription
3818	O_BomaASG13437_complete:A_BomaASG_c30237_g1_i2 113bp
3819	O_BomaASG13438_internal:A_BomaASG_c30239_g1_i1 213bp		crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]	GO:0000790 C chromatin GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0005720 C heterochromatin GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0072429 P response to intra-S DNA damage checkpoint signaling GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3820	O_BomaASG13439_3prime_partial:A_BomaASG_c30239_g1_i1 146bp
3821	O_BomaASG1343_complete:A_BomaASG_c9284_g1_i1 116bp
3822	O_BomaASG13440_5prime_partial:A_BomaASG_c30239_g1_i1 106bp
3823	O_BomaASG13441_3prime_partial:A_BomaASG_c30239_g1_i2 299bp		crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]	GO:0000790 C chromatin GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0005720 C heterochromatin GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0072429 P response to intra-S DNA damage checkpoint signaling GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3824	O_BomaASG13442_complete:A_BomaASG_c30239_g1_i2 160bp
3825	O_BomaASG13443_complete:A_BomaASG_c30239_g1_i2 116bp
3826	O_BomaASG13444_5prime_partial:A_BomaASG_c30239_g1_i2 106bp
3827	O_BomaASG13445_internal:A_BomaASG_c30239_g1_i3 135bp		crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]	GO:0000790 C chromatin GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0004520 F endodeoxyribonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005720 C heterochromatin GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0036297 P interstrand cross-link repair GO:0046872 F metal ion binding GO:0072429 P response to intra-S DNA damage checkpoint signaling GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3828	O_BomaASG13446_5prime_partial:A_BomaASG_c30239_g1_i3 106bp
3829	O_BomaASG13447_3prime_partial:A_BomaASG_c30239_g1_i4 299bp		crossover_junction_endonuclease_EME1_isoform_X2_[Bombyx_mori]	GO:0000790 C chromatin GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0005720 C heterochromatin GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0072429 P response to intra-S DNA damage checkpoint signaling GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3830	O_BomaASG13448_complete:A_BomaASG_c30239_g1_i4 160bp
3831	O_BomaASG13449_complete:A_BomaASG_c30239_g1_i4 116bp
3832	O_BomaASG1344_internal:A_BomaASG_c9287_g1_i1 103bp		uncharacterized_protein_LOC110386361_[Bombyx_mori]
3833	O_BomaASG13450_5prime_partial:A_BomaASG_c30239_g1_i4 106bp
3834	O_BomaASG13451_complete:A_BomaASG_c30241_g1_i1 282bp		E3_ubiquitin-protein_ligase_SIAH1-like_[Bombyx_mori]	GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005769 C early endosome GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006915 P apoptotic process GO:0007049 P cell cycle GO:0007275 P multicellular organism development GO:0007283 P spermatogenesis GO:0008022 F protein C-terminus binding GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030154 P cell differentiation GO:0030163 P protein catabolic process GO:0030877 C beta-catenin destruction complex GO:0031648 P protein destabilization GO:0042787 P ubiquitin-dependent protein catabolic process GO:0042802 F identical protein binding GO:0043065 P positive regulation of apoptotic process GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0046872 F metal ion binding GO:0051402 P neuron apoptotic process GO:0061630 F ubiquitin protein ligase activity GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
3835	O_BomaASG13452_5prime_partial:A_BomaASG_c30247_g1_i1 333bp		protein_kinase_C-binding_protein_1-like_isoform_X2_[Helicoverpa_armigera]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0001106 F transcription corepressor activity GO:0003682 F chromatin binding GO:0003712 F transcription coregulator activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006355 P regulation of transcription, DNA-templated GO:0008270 F zinc ion binding GO:0042393 F histone binding GO:0043197 C dendritic spine GO:0043198 C dendritic shaft GO:0046872 F metal ion binding GO:0047485 F protein N-terminus binding GO:0051491 P positive regulation of filopodium assembly GO:0060999 P positive regulation of dendritic spine development GO:0070491 F DNA-binding transcription factor binding GO:0098815 P modulation of excitatory postsynaptic potential GO:1902897 P regulation of postsynaptic density protein 95 clustering GO:1902952 P positive regulation of dendritic spine maintenance
3836	O_BomaASG13453_complete:A_BomaASG_c30247_g1_i1 115bp
3837	O_BomaASG13454_complete:A_BomaASG_c30247_g1_i1 101bp
3838	O_BomaASG13455_3prime_partial:A_BomaASG_c30248_g1_i1 145bp		cysteine_protease_ATG4C_isoform_X2_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0006508 P proteolysis GO:0006810 P transport GO:0006914 P autophagy GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0015031 P protein transport GO:0016787 F hydrolase activity
3839	O_BomaASG13456_3prime_partial:A_BomaASG_c30248_g1_i2 244bp		cysteine_protease_ATG4D_isoform_X1_[Bombyx_mori]	GO:0000045 P autophagosome assembly GO:0000422 P autophagy of mitochondrion GO:0004197 F cysteine-type endopeptidase activity GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0005829 C cytosol GO:0006501 P C-terminal protein lipidation GO:0006508 P proteolysis GO:0006612 P protein targeting to membrane GO:0006810 P transport GO:0006914 P autophagy GO:0006915 P apoptotic process GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0015031 P protein transport GO:0016485 P protein processing GO:0016787 F hydrolase activity GO:0044804 P autophagy of nucleus GO:0051697 P protein delipidation
3840	O_BomaASG13457_internal:A_BomaASG_c30248_g2_i1 217bp		autophagy_related_protein_Atg4-like_protein,_partial_[Bombyx_mori]	GO:0000045 P autophagosome assembly GO:0000422 P autophagy of mitochondrion GO:0004197 F cysteine-type endopeptidase activity GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0005829 C cytosol GO:0006501 P C-terminal protein lipidation GO:0006508 P proteolysis GO:0006612 P protein targeting to membrane GO:0006810 P transport GO:0006914 P autophagy GO:0006915 P apoptotic process GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0015031 P protein transport GO:0016485 P protein processing GO:0016787 F hydrolase activity GO:0044804 P autophagy of nucleus GO:0051697 P protein delipidation