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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3631 O_BomaASG13269_5prime_partial:A_BomaASG_c30151_g1_i2
166bp
uncharacterized_protein_LOC101746752_isoform_X1_[Bombyx_mori]
3632 O_BomaASG1326_internal:A_BomaASG_c9241_g1_i1
111bp
3633 O_BomaASG13270_3prime_partial:A_BomaASG_c30151_g1_i3
275bp
uncharacterized_protein_LOC101741636_[Bombyx_mori]
GO:0005634 C nucleus
3634 O_BomaASG13271_5prime_partial:A_BomaASG_c30151_g1_i3
106bp
3635 O_BomaASG13272_complete:A_BomaASG_c30151_g1_i4
234bp
uncharacterized_protein_LOC101746752_isoform_X1_[Bombyx_mori]
3636 O_BomaASG13273_internal:A_BomaASG_c30152_g1_i1
100bp
actin_cytoskeleton-regulatory_complex_protein_pan1,_partial_[Bombyx_mori]
3637 O_BomaASG13274_internal:A_BomaASG_c30152_g1_i2
102bp
actin_cytoskeleton-regulatory_complex_protein_pan1,_partial_[Bombyx_mori]
3638 O_BomaASG13275_3prime_partial:A_BomaASG_c30153_g1_i1
133bp
UDP-glucuronic_acid_decarboxylase_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0032580 C Golgi cisterna membrane
GO:0033320 P UDP-D-xylose biosynthetic process
GO:0042803 F protein homodimerization activity
GO:0048040 F UDP-glucuronate decarboxylase activity
GO:0051262 P protein tetramerization
GO:0070062 C extracellular exosome
GO:0070403 F NAD+ binding
3639 O_BomaASG13276_complete:A_BomaASG_c30154_g1_i1
368bp
2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003863 F 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005947 C mitochondrial alpha-ketoglutarate dehydrogenase complex
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0032403 F protein-containing complex binding
GO:0051384 P response to glucocorticoid
GO:0051591 P response to cAMP
GO:0055114 P obsolete oxidation-reduction process
3640 O_BomaASG13277_complete:A_BomaASG_c30154_g1_i1
104bp
3641 O_BomaASG13278_internal:A_BomaASG_c30156_g1_i1
346bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
3642 O_BomaASG13279_internal:A_BomaASG_c30156_g1_i2
408bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
3643 O_BomaASG1327_internal:A_BomaASG_c9250_g1_i1
194bp
apoptosis-stimulating_of_p53_protein_1_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007165 P signal transduction
GO:0017124 F SH3 domain binding
GO:0042802 F identical protein binding
GO:0042981 P regulation of apoptotic process
GO:0045786 P negative regulation of cell cycle
GO:0048471 C perinuclear region of cytoplasm
GO:0051059 F NF-kappaB binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1900119 P positive regulation of execution phase of apoptosis
GO:1900740 P positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
GO:1901216 P positive regulation of neuron death
GO:1901796 P regulation of signal transduction by p53 class mediator
3644 O_BomaASG13280_5prime_partial:A_BomaASG_c30156_g1_i2
134bp
3645 O_BomaASG13281_internal:A_BomaASG_c30156_g1_i3
662bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
3646 O_BomaASG13282_complete:A_BomaASG_c30159_g1_i1
397bp
proteasomal_ATPase-associated_factor_1_[Bombyx_mori]
GO:0000502 C proteasome complex
3647 O_BomaASG13283_3prime_partial:A_BomaASG_c30159_g1_i2
179bp
proteasomal_ATPase-associated_factor_1_[Bombyx_mori]
GO:0000502 C proteasome complex
3648 O_BomaASG13284_internal:A_BomaASG_c30161_g2_i2
107bp
3649 O_BomaASG13285_internal:A_BomaASG_c30163_g1_i1
915bp
paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000183 P rDNA heterochromatin assembly
GO:0000776 C kinetochore
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0001701 P in utero embryonic development
GO:0002218 P activation of innate immune response
GO:0002230 P positive regulation of defense response to virus by host
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0007568 P aging
GO:0008134 F transcription factor binding
GO:0010243 P response to organonitrogen compound
GO:0010817 P regulation of hormone levels
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0032403 F protein-containing complex binding
GO:0033558 F protein deacetylase activity
GO:0034613 P cellular protein localization
GO:0042754 P negative regulation of circadian rhythm
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 C intercellular bridge
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0051595 P response to methylglyoxal
GO:0071333 P cellular response to glucose stimulus
GO:1900181 P negative regulation of protein localization to nucleus
GO:1901675 P negative regulation of histone H3-K27 acetylation
GO:1903351 P cellular response to dopamine
GO:2000678 P negative regulation of transcription regulatory region DNA binding
3650 O_BomaASG13286_complete:A_BomaASG_c30163_g1_i1
101bp
3651 O_BomaASG13287_3prime_partial:A_BomaASG_c30163_g1_i3
446bp
paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000183 P rDNA heterochromatin assembly
GO:0000776 C kinetochore
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0001701 P in utero embryonic development
GO:0002218 P activation of innate immune response
GO:0002230 P positive regulation of defense response to virus by host
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0007568 P aging
GO:0008134 F transcription factor binding
GO:0010243 P response to organonitrogen compound
GO:0010817 P regulation of hormone levels
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0032403 F protein-containing complex binding
GO:0033558 F protein deacetylase activity
GO:0034613 P cellular protein localization
GO:0042754 P negative regulation of circadian rhythm
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 C intercellular bridge
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0051595 P response to methylglyoxal
GO:0071333 P cellular response to glucose stimulus
GO:1900181 P negative regulation of protein localization to nucleus
GO:1901675 P negative regulation of histone H3-K27 acetylation
GO:1903351 P cellular response to dopamine
GO:2000678 P negative regulation of transcription regulatory region DNA binding
3652 O_BomaASG13288_5prime_partial:A_BomaASG_c30163_g1_i3
424bp
paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000805 C X chromosome
GO:0000806 C Y chromosome
GO:0001106 F transcription corepressor activity
GO:0001741 C XY body
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007519 P skeletal muscle tissue development
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0030849 C autosome
GO:0044255 P cellular lipid metabolic process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048738 P cardiac muscle tissue development
3653 O_BomaASG13289_complete:A_BomaASG_c30163_g1_i3
101bp
3654 O_BomaASG1328_5prime_partial:A_BomaASG_c9250_g1_i1
126bp
3655 O_BomaASG13290_internal:A_BomaASG_c30163_g1_i4
180bp
paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]
3656 O_BomaASG13291_3prime_partial:A_BomaASG_c30164_g1_i1
351bp
rna-dependent_dna_polymerase_[Lasius_niger]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
3657 O_BomaASG13292_internal:A_BomaASG_c30165_g1_i1
226bp
lethal(2)_giant_larvae_protein_isoform_X5_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006461 P protein-containing complex assembly
GO:0006887 P exocytosis
GO:0006893 P Golgi to plasma membrane transport
GO:0007409 P axonogenesis
GO:0008593 P regulation of Notch signaling pathway
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0017157 P regulation of exocytosis
GO:0019901 F protein kinase binding
GO:0019905 F syntaxin binding
GO:0022008 P neurogenesis
GO:0030424 C axon
GO:0030864 C cortical actin cytoskeleton
GO:0030866 P cortical actin cytoskeleton organization
GO:0031901 C early endosome membrane
GO:0032588 C trans-Golgi network membrane
GO:0032878 P regulation of establishment or maintenance of cell polarity
GO:0042995 C cell projection
GO:0043547 P positive regulation of GTPase activity
GO:0050708 P regulation of protein secretion
GO:0051294 P establishment of spindle orientation
3658 O_BomaASG13293_3prime_partial:A_BomaASG_c30165_g1_i1
129bp
3659 O_BomaASG13294_5prime_partial:A_BomaASG_c30165_g1_i1
128bp
3660 O_BomaASG13295_internal:A_BomaASG_c30165_g1_i2
507bp
lethal(2)_giant_larvae_protein_isoform_X3_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005886 C plasma membrane
GO:0006887 P exocytosis
GO:0007049 P cell cycle
GO:0016020 C membrane
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