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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2641 O_BomaASG12378_complete:A_BomaASG_c29661_g1_i1
143bp
2642 O_BomaASG12379_3prime_partial:A_BomaASG_c29661_g1_i2
972bp
titin_isoform_X1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
2643 O_BomaASG1237_internal:A_BomaASG_c8939_g1_i1
245bp
extensin-2_[Bombyx_mori]
2644 O_BomaASG12380_complete:A_BomaASG_c29661_g1_i2
157bp
2645 O_BomaASG12381_complete:A_BomaASG_c29661_g1_i2
123bp
2646 O_BomaASG12382_3prime_partial:A_BomaASG_c29661_g1_i3
968bp
titin_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
2647 O_BomaASG12383_complete:A_BomaASG_c29661_g1_i3
157bp
2648 O_BomaASG12384_complete:A_BomaASG_c29661_g1_i3
143bp
2649 O_BomaASG12385_complete:A_BomaASG_c29661_g1_i3
123bp
2650 O_BomaASG12386_3prime_partial:A_BomaASG_c29662_g1_i1
325bp
uncharacterized_protein_LOC101742841_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
2651 O_BomaASG12387_internal:A_BomaASG_c29662_g1_i2
359bp
uncharacterized_protein_LOC101742841_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
2652 O_BomaASG12388_3prime_partial:A_BomaASG_c29662_g1_i3
449bp
uncharacterized_protein_LOC101742841_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
2653 O_BomaASG12389_3prime_partial:A_BomaASG_c29663_g1_i1
357bp
D-glucuronyl_C5-epimerase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0016857 F racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0030210 P heparin biosynthetic process
GO:0047464 F heparosan-N-sulfate-glucuronate 5-epimerase activity
GO:0050379 F UDP-glucuronate 5'-epimerase activity
2654 O_BomaASG1238_complete:A_BomaASG_c8943_g1_i1
154bp
NADH_dehydrogenase_isoform_2_[Bombyx_mori]
GO:0000036 F acyl carrier activity
GO:0005739 C mitochondrion
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0031177 F phosphopantetheine binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
2655 O_BomaASG12390_complete:A_BomaASG_c29663_g1_i1
112bp
2656 O_BomaASG12391_complete:A_BomaASG_c29664_g1_i1
408bp
ornithine_aminotransferase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
2657 O_BomaASG12392_complete:A_BomaASG_c29664_g1_i2
314bp
ornithine_aminotransferase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
2658 O_BomaASG12393_internal:A_BomaASG_c29665_g1_i1
437bp
2659 O_BomaASG12394_internal:A_BomaASG_c29665_g1_i1
437bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
2660 O_BomaASG12395_3prime_partial:A_BomaASG_c29665_g1_i1
201bp
2661 O_BomaASG12396_5prime_partial:A_BomaASG_c29665_g1_i1
198bp
2662 O_BomaASG12397_complete:A_BomaASG_c29667_g1_i1
880bp
MOG_interacting_and_ectopic_P-granules_protein_1_[Bombyx_mori]
GO:0002119 P nematode larval development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0007506 P gonadal mesoderm development
GO:0007548 P sex differentiation
GO:0008134 F transcription factor binding
GO:0008406 P gonad development
GO:0010468 P regulation of gene expression
GO:0017151 F DEAD/H-box RNA helicase binding
GO:0030154 P cell differentiation
GO:0040025 P vulval development
GO:0040035 P hermaphrodite genitalia development
GO:0042802 F identical protein binding
GO:0042826 F histone deacetylase binding
GO:0046872 F metal ion binding
GO:0048599 P oocyte development
2663 O_BomaASG12398_complete:A_BomaASG_c29667_g1_i2
413bp
MOG_interacting_and_ectopic_P-granules_protein_1_[Bombyx_mori]
GO:0002119 P nematode larval development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0007506 P gonadal mesoderm development
GO:0007548 P sex differentiation
GO:0008134 F transcription factor binding
GO:0008406 P gonad development
GO:0010468 P regulation of gene expression
GO:0017151 F DEAD/H-box RNA helicase binding
GO:0030154 P cell differentiation
GO:0040025 P vulval development
GO:0040035 P hermaphrodite genitalia development
GO:0042802 F identical protein binding
GO:0042826 F histone deacetylase binding
GO:0046872 F metal ion binding
GO:0048599 P oocyte development
2664 O_BomaASG12399_complete:A_BomaASG_c29668_g1_i1
474bp
DNA-binding_protein_Ikaros_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0007498 P mesoderm development
GO:0016568 P chromatin organization
GO:0030098 P lymphocyte differentiation
GO:0030218 P erythrocyte differentiation
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
2665 O_BomaASG1239_complete:A_BomaASG_c8943_g1_i2
154bp
NADH_dehydrogenase_isoform_1_[Bombyx_mori]
GO:0000036 F acyl carrier activity
GO:0005739 C mitochondrion
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0031177 F phosphopantetheine binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
2666 O_BomaASG123_complete:A_BomaASG_c780_g1_i2
255bp
ALY_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0051028 P mRNA transport
2667 O_BomaASG12400_complete:A_BomaASG_c29668_g1_i1
163bp
2668 O_BomaASG12401_complete:A_BomaASG_c29668_g1_i1
117bp
2669 O_BomaASG12402_3prime_partial:A_BomaASG_c29669_g1_i1
164bp
WASH_complex_subunit_3_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
2670 O_BomaASG12403_3prime_partial:A_BomaASG_c29669_g1_i2
164bp
WASH_complex_subunit_3_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
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