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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1891 O_BomaASG11702_5prime_partial:A_BomaASG_c29166_g1_i1
121bp
1892 O_BomaASG11703_5prime_partial:A_BomaASG_c29166_g1_i1
112bp
lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032452 F histone demethylase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072718 P response to cisplatin
GO:0098869 P cellular oxidant detoxification
1893 O_BomaASG11704_5prime_partial:A_BomaASG_c29166_g1_i2
585bp
lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032452 F histone demethylase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072718 P response to cisplatin
GO:0098869 P cellular oxidant detoxification
1894 O_BomaASG11705_complete:A_BomaASG_c29166_g1_i2
321bp
AAEL007163-PA_[Aedes_aegypti]
1895 O_BomaASG11706_complete:A_BomaASG_c29166_g1_i2
196bp
1896 O_BomaASG11707_3prime_partial:A_BomaASG_c29166_g1_i2
102bp
1897 O_BomaASG11708_3prime_partial:A_BomaASG_c29169_g1_i1
382bp
four_and_a_half_LIM_domains_protein_2_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1898 O_BomaASG11709_5prime_partial:A_BomaASG_c29169_g1_i1
105bp
_hypothetical_protein_BOS_11380_[Bos_taurus]
1899 O_BomaASG1170_5prime_partial:A_BomaASG_c8242_g1_i1
131bp
1900 O_BomaASG11710_3prime_partial:A_BomaASG_c29169_g1_i1
99bp
four_and_a_half_LIM_domains_protein_2_[Castor_canadensis]
1901 O_BomaASG11711_internal:A_BomaASG_c29169_g1_i2
158bp
four_and_a_half_LIM_domains_protein_2_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001649 P osteoblast differentiation
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005925 C focal adhesion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0009725 P response to hormone
GO:0015629 C actin cytoskeleton
GO:0042802 F identical protein binding
GO:0043066 P negative regulation of apoptotic process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0055014 P atrial cardiac muscle cell development
GO:0055015 P ventricular cardiac muscle cell development
GO:0060347 P heart trabecula formation
1902 O_BomaASG11712_5prime_partial:A_BomaASG_c29169_g1_i2
105bp
_hypothetical_protein_BOS_11380_[Bos_taurus]
1903 O_BomaASG11713_3prime_partial:A_BomaASG_c29169_g1_i2
99bp
four_and_a_half_LIM_domains_protein_2_[Castor_canadensis]
1904 O_BomaASG11714_complete:A_BomaASG_c29170_g1_i1
227bp
breast_cancer_metastasis-suppressor_1-like_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016575 P histone deacetylation
GO:0040008 P regulation of growth
GO:0042826 F histone deacetylase binding
GO:0070822 C Sin3-type complex
1905 O_BomaASG11715_5prime_partial:A_BomaASG_c29171_g1_i1
404bp
rho_GTPase-activating_protein_8_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
1906 O_BomaASG11716_complete:A_BomaASG_c29171_g1_i2
494bp
rho_GTPase-activating_protein_8_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
1907 O_BomaASG11717_complete:A_BomaASG_c29173_g1_i1
299bp
HMGB_protein_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006338 P chromatin remodeling
GO:0007379 P segment specification
GO:0008134 F transcription factor binding
GO:0008301 F DNA binding, bending
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0017025 F TBP-class protein binding
GO:0017055 P negative regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0032502 P developmental process
GO:0035218 P leg disc development
GO:0043388 P positive regulation of DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
1908 O_BomaASG11718_complete:A_BomaASG_c29173_g1_i2
489bp
dsp_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006338 P chromatin remodeling
GO:0007379 P segment specification
GO:0008134 F transcription factor binding
GO:0008301 F DNA binding, bending
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0017025 F TBP-class protein binding
GO:0017055 P negative regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0032502 P developmental process
GO:0035218 P leg disc development
GO:0043388 P positive regulation of DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
1909 O_BomaASG11719_complete:A_BomaASG_c29173_g1_i2
129bp
1910 O_BomaASG1171_complete:A_BomaASG_c8265_g1_i1
134bp
uncharacterized_protein_LOC101746705_isoform_X1_[Bombyx_mori]
1911 O_BomaASG11720_internal:A_BomaASG_c29178_g1_i1
565bp
Uncharacterized_protein_OBRU01_00308_[Operophtera_brumata]
1912 O_BomaASG11721_complete:A_BomaASG_c29181_g1_i1
1305bp
DNA_repair_protein_RAD50_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0002168 P instar larval development
GO:0003690 F double-stranded DNA binding
GO:0003691 F double-stranded telomeric DNA binding
GO:0004003 F DNA helicase activity
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007004 P telomere maintenance via telomerase
GO:0007049 P cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008104 P protein localization
GO:0008408 F 3'-5' exonuclease activity
GO:0016233 P telomere capping
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030870 C Mre11 complex
GO:0032508 P DNA duplex unwinding
GO:0035861 C site of double-strand break
GO:0043047 F single-stranded telomeric DNA binding
GO:0046872 F metal ion binding
GO:0046939 P nucleotide phosphorylation
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0051880 F G-quadruplex DNA binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1913 O_BomaASG11722_5prime_partial:A_BomaASG_c29182_g1_i1
106bp
polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
1914 O_BomaASG11723_complete:A_BomaASG_c29183_g1_i1
129bp
POC1_centriolar_protein_homolog_A_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
1915 O_BomaASG11724_3prime_partial:A_BomaASG_c29183_g1_i2
217bp
POC1_centriolar_protein_homolog_A_isoform_X2_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0030030 P cell projection organization
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
1916 O_BomaASG11725_3prime_partial:A_BomaASG_c29183_g1_i3
270bp
POC1_centriolar_protein_homolog_A_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
1917 O_BomaASG11726_complete:A_BomaASG_c29184_g1_i2
269bp
PREDICTED:_pre-mRNA-splicing_factor_ISY1_homolog_[Papilio_xuthus]
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000384 F first spliceosomal transesterification activity
GO:0000389 P mRNA 3'-splice site recognition
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
GO:0071020 C post-spliceosomal complex
1918 O_BomaASG11727_complete:A_BomaASG_c29185_g1_i1
773bp
phospholipase_A-2-activating_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0006644 P phospholipid metabolic process
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0016005 F phospholipase A2 activator activity
GO:0043085 P positive regulation of catalytic activity
GO:0070062 C extracellular exosome
1919 O_BomaASG11728_complete:A_BomaASG_c29185_g1_i1
140bp
1920 O_BomaASG11729_internal:A_BomaASG_c29187_g1_i1
238bp
RUS1_family_protein_C16orf58_homolog_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
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