SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32735
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1501 O_BomaASG11351_complete:A_BomaASG_c28999_g1_i4
105bp
1502 O_BomaASG11352_complete:A_BomaASG_c28999_g1_i4
103bp
1503 O_BomaASG11353_complete:A_BomaASG_c28999_g1_i5
351bp
RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1504 O_BomaASG11354_complete:A_BomaASG_c28999_g1_i5
105bp
1505 O_BomaASG11355_complete:A_BomaASG_c28999_g1_i5
103bp
1506 O_BomaASG11356_complete:A_BomaASG_c28999_g1_i6
351bp
RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1507 O_BomaASG11357_complete:A_BomaASG_c28999_g1_i6
105bp
1508 O_BomaASG11358_complete:A_BomaASG_c28999_g1_i6
103bp
1509 O_BomaASG11359_complete:A_BomaASG_c28999_g1_i7
351bp
RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1510 O_BomaASG1135_internal:A_BomaASG_c7825_g1_i2
121bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1511 O_BomaASG11360_complete:A_BomaASG_c28999_g1_i7
105bp
1512 O_BomaASG11361_complete:A_BomaASG_c28999_g1_i7
103bp
1513 O_BomaASG11362_5prime_partial:A_BomaASG_c29000_g1_i1
184bp
Erg28-domain_containing_protein_[Bombyx_mori]
1514 O_BomaASG11363_complete:A_BomaASG_c29000_g1_i2
175bp
Erg28-domain_containing_protein_[Bombyx_mori]
1515 O_BomaASG11364_5prime_partial:A_BomaASG_c29000_g1_i3
158bp
Erg28-domain_containing_protein_[Bombyx_mori]
1516 O_BomaASG11365_3prime_partial:A_BomaASG_c29002_g1_i1
545bp
uncharacterized_protein_LOC101738020_[Bombyx_mori]
1517 O_BomaASG11366_3prime_partial:A_BomaASG_c29003_g1_i2
526bp
condensin-2_complex_subunit_D3_isoform_X1_[Bombyx_mori]
GO:0000779 C condensed chromosome, centromeric region
GO:0000799 C condensin complex
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0010032 P meiotic chromosome condensation
GO:0016020 C membrane
GO:0030261 P chromosome condensation
GO:0031618 C pericentric heterochromatin
GO:0035064 F methylated histone binding
GO:0051301 P cell division
GO:0051304 P chromosome separation
1518 O_BomaASG11367_5prime_partial:A_BomaASG_c29004_g1_i1
112bp
1519 O_BomaASG11368_5prime_partial:A_BomaASG_c29004_g1_i1
108bp
1520 O_BomaASG11369_internal:A_BomaASG_c29005_g1_i1
171bp
uncharacterized_protein_LOC101742851_isoform_X2_[Bombyx_mori]
1521 O_BomaASG1136_5prime_partial:A_BomaASG_c7825_g1_i2
110bp
1522 O_BomaASG11370_3prime_partial:A_BomaASG_c29005_g2_i1
106bp
uncharacterized_protein_LOC101742851_isoform_X1_[Bombyx_mori]
1523 O_BomaASG11371_5prime_partial:A_BomaASG_c29005_g3_i1
190bp
uncharacterized_protein_LOC101742851_isoform_X2_[Bombyx_mori]
1524 O_BomaASG11372_5prime_partial:A_BomaASG_c29005_g3_i2
217bp
uncharacterized_protein_LOC101742851_isoform_X2_[Bombyx_mori]
1525 O_BomaASG11373_internal:A_BomaASG_c29006_g1_i1
158bp
PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
1526 O_BomaASG11374_5prime_partial:A_BomaASG_c29006_g1_i2
138bp
PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
1527 O_BomaASG11375_complete:A_BomaASG_c29006_g1_i2
121bp
1528 O_BomaASG11376_complete:A_BomaASG_c29008_g1_i1
332bp
protein_abrupt_isoform_X1_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
1529 O_BomaASG11377_complete:A_BomaASG_c29008_g1_i1
106bp
1530 O_BomaASG11378_internal:A_BomaASG_c29009_g1_i2
302bp
U7_snRNA-associated_Sm-like_protein_LSm11_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0030529 C ribonucleoprotein complex
previous next from show/32735

- SilkBase 1999-2023 -