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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6691 O_BomoMSG16022_complete:A_BomoMSG_c25369_g1_i2
231bp
6692 O_BomoMSG16023_complete:A_BomoMSG_c25369_g1_i2
108bp
6693 O_BomoMSG16024_5prime_partial:A_BomoMSG_c25370_g1_i1
294bp
 protein_phosphatase_methylesterase_1_isoform_X5_[Bombyx_mori]
GO:0002028 P regulation of sodium ion transport
GO:0006482 P protein demethylation
GO:0008601 F protein phosphatase regulator activity
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0051721 F protein phosphatase 2A binding
GO:0051722 F protein C-terminal methylesterase activity
GO:0052689 F carboxylic ester hydrolase activity
6694 O_BomoMSG16025_complete:A_BomoMSG_c25370_g1_i1
116bp
6695 O_BomoMSG16026_complete:A_BomoMSG_c25370_g1_i1
106bp
6696 O_BomoMSG16027_internal:A_BomoMSG_c25370_g1_i2
270bp
 protein_phosphatase_methylesterase_1_isoform_X5_[Bombyx_mori]
GO:0002028 P regulation of sodium ion transport
GO:0006482 P protein demethylation
GO:0008601 F protein phosphatase regulator activity
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0051721 F protein phosphatase 2A binding
GO:0051722 F protein C-terminal methylesterase activity
GO:0052689 F carboxylic ester hydrolase activity
6697 O_BomoMSG16028_complete:A_BomoMSG_c25370_g1_i2
116bp
6698 O_BomoMSG16029_5prime_partial:A_BomoMSG_c25371_g1_i1
116bp
6699 O_BomoMSG1602_internal:A_BomoMSG_c7796_g1_i1
191bp
 uncharacterized_protein_LOC110384829_[Bombyx_mori]
6700 O_BomoMSG16030_5prime_partial:A_BomoMSG_c25371_g1_i2
589bp
 kelch-like_protein_diablo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0016049 P cell growth
GO:0016567 P protein ubiquitination
GO:0050807 P regulation of synapse organization
6701 O_BomoMSG16031_complete:A_BomoMSG_c25371_g1_i2
255bp
6702 O_BomoMSG16032_complete:A_BomoMSG_c25371_g1_i2
116bp
 hypothetical_protein_Ctob_015752_[Chrysochromulina_sp._CCMP291]
6703 O_BomoMSG16033_3prime_partial:A_BomoMSG_c25372_g1_i1
315bp
 zinc_finger_protein_99_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
6704 O_BomoMSG16034_5prime_partial:A_BomoMSG_c25372_g1_i1
114bp
6705 O_BomoMSG16035_complete:A_BomoMSG_c25372_g1_i1
105bp
6706 O_BomoMSG16036_internal:A_BomoMSG_c25372_g1_i2
148bp
 zinc_finger_protein_99_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
6707 O_BomoMSG16037_3prime_partial:A_BomoMSG_c25372_g1_i3
493bp
 zinc_finger_protein_99_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
6708 O_BomoMSG16038_complete:A_BomoMSG_c25372_g1_i3
105bp
6709 O_BomoMSG16039_internal:A_BomoMSG_c25373_g1_i2
528bp
 putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
6710 O_BomoMSG1603_internal:A_BomoMSG_c7796_g1_i1
191bp
6711 O_BomoMSG16040_internal:A_BomoMSG_c25373_g1_i3
154bp
 putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0035770 C ribonucleoprotein granule
GO:0042254 P ribosome biogenesis
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:1902775 P mitochondrial large ribosomal subunit assembly
6712 O_BomoMSG16041_internal:A_BomoMSG_c25373_g1_i4
179bp
 putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0035770 C ribonucleoprotein granule
GO:0042254 P ribosome biogenesis
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:1902775 P mitochondrial large ribosomal subunit assembly
6713 O_BomoMSG16042_internal:A_BomoMSG_c25373_g1_i5
391bp
 putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
6714 O_BomoMSG16043_complete:A_BomoMSG_c25374_g1_i1
128bp
 cold_shock_domain-containing_protein_CG9705_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0048813 P dendrite morphogenesis
6715 O_BomoMSG16044_internal:A_BomoMSG_c25376_g1_i1
118bp
 dnaJ_homolog_subfamily_C_member_13_isoform_X3_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
6716 O_BomoMSG16045_internal:A_BomoMSG_c25376_g2_i1
268bp
 dnaJ_homolog_subfamily_C_member_13_isoform_X3_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
6717 O_BomoMSG16046_internal:A_BomoMSG_c25376_g1_i2
159bp
 dnaJ_homolog_subfamily_C_member_13_isoform_X3_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
6718 O_BomoMSG16047_internal:A_BomoMSG_c25376_g1_i3
137bp
 dnaJ_homolog_subfamily_C_member_13_isoform_X3_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
GO:0071203 C WASH complex
GO:1902954 P regulation of early endosome to recycling endosome transport
GO:2000641 P regulation of early endosome to late endosome transport
6719 O_BomoMSG16048_complete:A_BomoMSG_c25378_g1_i1
451bp
 glycoprotein_3-alpha-L-fucosyltransferase_A_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0006486 P protein glycosylation
GO:0007399 P nervous system development
GO:0008417 F fucosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0018392 F glycoprotein 3-alpha-L-fucosyltransferase activity
GO:0032580 C Golgi cisterna membrane
GO:0033932 F 1,3-alpha-L-fucosidase activity
GO:0036071 P N-glycan fucosylation
GO:0046920 F alpha-(1->3)-fucosyltransferase activity
6720 O_BomoMSG16049_5prime_partial:A_BomoMSG_c25379_g1_i1
103bp
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