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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5731 O_BomoMSG15159_complete:A_BomoMSG_c25065_g1_i1
259bp
 pre-mRNA-splicing_factor_RBM22_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0033120 P positive regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043009 P chordate embryonic development
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046872 F metal ion binding
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
5732 O_BomoMSG1515_internal:A_BomoMSG_c7447_g1_i1
137bp
 zinc_finger_protein_OZF_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
5733 O_BomoMSG15160_complete:A_BomoMSG_c25065_g1_i2
410bp
 pre-mRNA-splicing_factor_RBM22_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0033120 P positive regulation of RNA splicing
GO:0035690 P cellular response to xenobiotic stimulus
GO:0036002 F pre-mRNA binding
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046872 F metal ion binding
GO:0048306 F calcium-dependent protein binding
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0090316 P positive regulation of intracellular protein transport
5734 O_BomoMSG15161_complete:A_BomoMSG_c25065_g1_i2
100bp
5735 O_BomoMSG15162_internal:A_BomoMSG_c25066_g1_i1
288bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
5736 O_BomoMSG15163_internal:A_BomoMSG_c25066_g1_i2
292bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
5737 O_BomoMSG15164_internal:A_BomoMSG_c25066_g2_i1
151bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X1_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
5738 O_BomoMSG15165_internal:A_BomoMSG_c25066_g2_i2
145bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
5739 O_BomoMSG15166_internal:A_BomoMSG_c25067_g1_i1
611bp
 titin_isoform_X2_[Bombyx_mori]
5740 O_BomoMSG15167_complete:A_BomoMSG_c25067_g1_i1
283bp
5741 O_BomoMSG15168_5prime_partial:A_BomoMSG_c25067_g1_i1
142bp
5742 O_BomoMSG15169_3prime_partial:A_BomoMSG_c25067_g1_i1
141bp
5743 O_BomoMSG1516_internal:A_BomoMSG_c7451_g1_i1
129bp
 UDP-glucose_4-epimerase_[Bombyx_mori]
GO:0003978 F UDP-glucose 4-epimerase activity
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0016853 F isomerase activity
GO:0016857 F racemase and epimerase activity, acting on carbohydrates and derivatives
5744 O_BomoMSG15170_complete:A_BomoMSG_c25067_g1_i1
106bp
5745 O_BomoMSG15171_5prime_partial:A_BomoMSG_c25067_g1_i1
105bp
5746 O_BomoMSG15172_internal:A_BomoMSG_c25068_g1_i1
296bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0007031 P peroxisome organization
GO:0016020 C membrane
5747 O_BomoMSG15173_internal:A_BomoMSG_c25068_g1_i2
421bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015031 P protein transport
GO:0016558 P protein import into peroxisome matrix
5748 O_BomoMSG15174_3prime_partial:A_BomoMSG_c25068_g1_i3
430bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015031 P protein transport
GO:0016558 P protein import into peroxisome matrix
5749 O_BomoMSG15175_5prime_partial:A_BomoMSG_c25068_g1_i3
176bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
5750 O_BomoMSG15176_internal:A_BomoMSG_c25068_g1_i4
143bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005829 C cytosol
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
5751 O_BomoMSG15177_3prime_partial:A_BomoMSG_c25068_g1_i5
430bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015031 P protein transport
GO:0016558 P protein import into peroxisome matrix
5752 O_BomoMSG15178_5prime_partial:A_BomoMSG_c25069_g1_i1
382bp
 probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
5753 O_BomoMSG15179_complete:A_BomoMSG_c25069_g1_i3
598bp
 probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
5754 O_BomoMSG1517_internal:A_BomoMSG_c7464_g1_i1
125bp
 LOW_QUALITY_PROTEIN:_putative_tyramine_receptor_2_[Helicoverpa_armigera]
5755 O_BomoMSG15180_complete:A_BomoMSG_c25069_g1_i3
105bp
5756 O_BomoMSG15181_5prime_partial:A_BomoMSG_c25069_g1_i4
270bp
 probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
5757 O_BomoMSG15182_5prime_partial:A_BomoMSG_c25069_g1_i5
212bp
 probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
5758 O_BomoMSG15183_5prime_partial:A_BomoMSG_c25070_g1_i1
102bp
 ADP-ribosylation_factor-like_protein_isoform_X1_[Bombyx_mori]
5759 O_BomoMSG15184_complete:A_BomoMSG_c25070_g1_i2
474bp
 ADP-ribosylation_factor-like_protein_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0061501 F 2',3'-cyclic GMP-AMP synthase activity
5760 O_BomoMSG15185_complete:A_BomoMSG_c25070_g1_i2
106bp
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