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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4141 O_BomoMSG13728_complete:A_BomoMSG_c24475_g1_i1
106bp
4142 O_BomoMSG13729_3prime_partial:A_BomoMSG_c24475_g1_i2
260bp
 seipin_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008610 P lipid biosynthetic process
GO:0010883 P regulation of lipid storage
GO:0010884 P positive regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0019915 P lipid storage
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0042594 P response to starvation
GO:0046339 P diacylglycerol metabolic process
GO:0046473 P phosphatidic acid metabolic process
GO:0046890 P regulation of lipid biosynthetic process
GO:0090207 P regulation of triglyceride metabolic process
4143 O_BomoMSG1372_complete:A_BomoMSG_c6321_g1_i1
391bp
 NSFL1_cofactor_p47-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007030 P Golgi organization
GO:0008289 F lipid binding
GO:0031468 P nuclear membrane reassembly
GO:0043130 F ubiquitin binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0061025 P membrane fusion
4144 O_BomoMSG13730_complete:A_BomoMSG_c24475_g1_i2
106bp
4145 O_BomoMSG13731_complete:A_BomoMSG_c24475_g1_i3
333bp
 seipin_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008610 P lipid biosynthetic process
GO:0010883 P regulation of lipid storage
GO:0010884 P positive regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0019915 P lipid storage
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0042594 P response to starvation
GO:0046339 P diacylglycerol metabolic process
GO:0046473 P phosphatidic acid metabolic process
GO:0046890 P regulation of lipid biosynthetic process
GO:0090207 P regulation of triglyceride metabolic process
4146 O_BomoMSG13732_complete:A_BomoMSG_c24475_g1_i3
106bp
4147 O_BomoMSG13733_5prime_partial:A_BomoMSG_c24475_g1_i4
329bp
 seipin_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008610 P lipid biosynthetic process
GO:0010883 P regulation of lipid storage
GO:0010884 P positive regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0019915 P lipid storage
GO:0032469 P endoplasmic reticulum calcium ion homeostasis
GO:0042594 P response to starvation
GO:0046339 P diacylglycerol metabolic process
GO:0046473 P phosphatidic acid metabolic process
GO:0046890 P regulation of lipid biosynthetic process
GO:0090207 P regulation of triglyceride metabolic process
4148 O_BomoMSG13734_complete:A_BomoMSG_c24475_g1_i4
106bp
4149 O_BomoMSG13735_internal:A_BomoMSG_c24476_g1_i1
414bp
 acidic_nucleoplasmic_DNA-binding_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
4150 O_BomoMSG13736_5prime_partial:A_BomoMSG_c24477_g1_i1
117bp
 probable_ATP-dependent_RNA_helicase_DDX23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
4151 O_BomoMSG13737_3prime_partial:A_BomoMSG_c24477_g1_i1
99bp
 hypothetical_protein_RMDY18_06200_[Rothia_mucilaginosa_DY-18]
4152 O_BomoMSG13738_complete:A_BomoMSG_c24477_g1_i2
841bp
 probable_ATP-dependent_RNA_helicase_DDX23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
4153 O_BomoMSG13739_complete:A_BomoMSG_c24477_g1_i2
217bp
 uncharacterized_protein_BN745_02520_[Klebsiella_variicola_CAG:634]
4154 O_BomoMSG1373_complete:A_BomoMSG_c6321_g1_i1
169bp
4155 O_BomoMSG13740_complete:A_BomoMSG_c24477_g1_i2
131bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_isoform_X2_[Callithrix_jacchus]
4156 O_BomoMSG13741_5prime_partial:A_BomoMSG_c24477_g1_i3
615bp
 probable_ATP-dependent_RNA_helicase_DDX23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
4157 O_BomoMSG13742_complete:A_BomoMSG_c24477_g1_i3
217bp
 uncharacterized_protein_BN745_02520_[Klebsiella_variicola_CAG:634]
4158 O_BomoMSG13743_complete:A_BomoMSG_c24477_g1_i3
131bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_isoform_X2_[Callithrix_jacchus]
4159 O_BomoMSG13744_complete:A_BomoMSG_c24478_g3_i3
148bp
 hydroxymethylglutaryl-CoA_lyase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004419 F hydroxymethylglutaryl-CoA lyase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016829 F lyase activity
GO:0046872 F metal ion binding
4160 O_BomoMSG13745_complete:A_BomoMSG_c24478_g3_i4
339bp
 hydroxymethylglutaryl-CoA_lyase_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003824 F catalytic activity
GO:0004419 F hydroxymethylglutaryl-CoA lyase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0007005 P mitochondrion organization
GO:0016829 F lyase activity
GO:0030145 F manganese ion binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0046951 P ketone body biosynthetic process
GO:0051262 P protein tetramerization
4161 O_BomoMSG13746_5prime_partial:A_BomoMSG_c24479_g1_i1
169bp
4162 O_BomoMSG13747_5prime_partial:A_BomoMSG_c24479_g1_i1
158bp
 zinc_finger_protein_431_[Bombyx_mori]
4163 O_BomoMSG13748_3prime_partial:A_BomoMSG_c24482_g1_i1
163bp
 AN1-type_zinc_finger_protein_1-like_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4164 O_BomoMSG13749_internal:A_BomoMSG_c24482_g1_i2
162bp
 AN1-type_zinc_finger_protein_1-like_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4165 O_BomoMSG1374_internal:A_BomoMSG_c6322_g1_i1
142bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
4166 O_BomoMSG13750_3prime_partial:A_BomoMSG_c24482_g1_i3
291bp
 AN1-type_zinc_finger_protein_1-like_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4167 O_BomoMSG13751_complete:A_BomoMSG_c24482_g1_i4
103bp
 AN1-type_zinc_finger_protein_1-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
4168 O_BomoMSG13752_internal:A_BomoMSG_c24484_g1_i1
372bp
 filamin-A_[Helicoverpa_armigera]
GO:0001725 C stress fiber
GO:0003334 P keratinocyte development
GO:0003382 P epithelial cell morphogenesis
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0015629 C actin cytoskeleton
GO:0016021 C integral component of membrane
GO:0030018 C Z disc
GO:0030036 P actin cytoskeleton organization
GO:0030154 P cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
4169 O_BomoMSG13753_internal:A_BomoMSG_c24484_g1_i2
141bp
 filamin-A_[Helicoverpa_armigera]
4170 O_BomoMSG13754_internal:A_BomoMSG_c24484_g1_i3
350bp
 filamin-A_[Helicoverpa_armigera]
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