SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4021 O_BomoMSG1361_internal:A_BomoMSG_c6212_g1_i1
120bp
 uncharacterized_protein_LOC101738987_isoform_X1_[Bombyx_mori]
4022 O_BomoMSG13620_5prime_partial:A_BomoMSG_c24425_g1_i1
107bp
4023 O_BomoMSG13621_internal:A_BomoMSG_c24425_g2_i1
326bp
 histone-lysine_N-methyltransferase_SETD2_isoform_X2_[Bombyx_mori]
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
4024 O_BomoMSG13622_5prime_partial:A_BomoMSG_c24425_g2_i1
118bp
4025 O_BomoMSG13623_5prime_partial:A_BomoMSG_c24425_g2_i1
108bp
4026 O_BomoMSG13624_complete:A_BomoMSG_c24425_g2_i1
108bp
4027 O_BomoMSG13625_internal:A_BomoMSG_c24425_g3_i1
390bp
 histone-lysine_N-methyltransferase_SETD2_isoform_X3_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0010452 P histone H3-K36 methylation
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0035220 P wing disc development
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051219 F phosphoprotein binding
4028 O_BomoMSG13626_5prime_partial:A_BomoMSG_c24428_g2_i1
199bp
 uncharacterized_protein_C9orf85_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4029 O_BomoMSG13627_internal:A_BomoMSG_c24428_g2_i2
126bp
 uncharacterized_protein_C9orf85_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4030 O_BomoMSG13628_5prime_partial:A_BomoMSG_c24429_g1_i1
173bp
 multidrug_resistance-associated_protein_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0006979 P response to oxidative stress
GO:0008152 P metabolic process
GO:0008514 F organic anion transmembrane transporter activity
GO:0009408 P response to heat
GO:0009986 C cell surface
GO:0015711 P organic anion transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016887 F ATP hydrolysis activity
GO:0019904 F protein domain specific binding
GO:0030644 P cellular chloride ion homeostasis
GO:0031427 P response to methotrexate
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043627 P response to estrogen
GO:0046581 C intercellular canaliculus
GO:0046685 P response to arsenic-containing substance
GO:0048545 P response to steroid hormone
GO:0055085 P transmembrane transport
GO:0070327 P thyroid hormone transport
4031 O_BomoMSG13629_5prime_partial:A_BomoMSG_c24429_g2_i1
282bp
 midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
4032 O_BomoMSG1362_complete:A_BomoMSG_c6214_g1_i1
247bp
 uncharacterized_protein_LOC101737844_isoform_X2_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009368 C endopeptidase Clp complex
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0051260 P protein homooligomerization
GO:0051603 P proteolysis involved in cellular protein catabolic process
4033 O_BomoMSG13630_3prime_partial:A_BomoMSG_c24430_g2_i1
356bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0046872 F metal ion binding
4034 O_BomoMSG13631_3prime_partial:A_BomoMSG_c24430_g2_i2
347bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0046872 F metal ion binding
4035 O_BomoMSG13632_complete:A_BomoMSG_c24431_g1_i1
178bp
 gonadal_protein_gdl_isoform_X1_[Bombyx_mori]
GO:0007283 P spermatogenesis
GO:0048477 P oogenesis
4036 O_BomoMSG13633_internal:A_BomoMSG_c24432_g1_i1
343bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0005244 F voltage-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0034765 P regulation of ion transmembrane transport
GO:0050780 F dopamine receptor binding
GO:1902476 P chloride transmembrane transport
4037 O_BomoMSG13634_5prime_partial:A_BomoMSG_c24432_g1_i1
129bp
 PREDICTED:_uncharacterized_protein_LOC105846689,_partial_[Hydra_vulgaris]
4038 O_BomoMSG13635_internal:A_BomoMSG_c24432_g1_i2
160bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
4039 O_BomoMSG13636_5prime_partial:A_BomoMSG_c24432_g1_i2
129bp
 PREDICTED:_uncharacterized_protein_LOC105846689,_partial_[Hydra_vulgaris]
4040 O_BomoMSG13637_3prime_partial:A_BomoMSG_c24433_g1_i1
170bp
 putative_ATPase_N2B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
4041 O_BomoMSG13638_5prime_partial:A_BomoMSG_c24436_g1_i1
185bp
 hypothetical_protein_RP20_CCG014256_[Aedes_albopictus]
4042 O_BomoMSG13639_3prime_partial:A_BomoMSG_c24436_g1_i1
181bp
 ras_GTPase-activating_protein-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
4043 O_BomoMSG1363_internal:A_BomoMSG_c6236_g1_i1
109bp
 cystathionine_beta-synthase_[Bombyx_mori]
GO:0004122 F cystathionine beta-synthase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006535 P cysteine biosynthetic process from serine
GO:0006563 P L-serine metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016829 F lyase activity
GO:0019343 P cysteine biosynthetic process via cystathionine
GO:0019344 P cysteine biosynthetic process
GO:0030170 F pyridoxal phosphate binding
GO:0042803 F protein homodimerization activity
GO:0043418 P homocysteine catabolic process
GO:0046872 F metal ion binding
GO:0050667 P homocysteine metabolic process
GO:0070814 P hydrogen sulfide biosynthetic process
4044 O_BomoMSG13640_3prime_partial:A_BomoMSG_c24437_g1_i1
516bp
 uncharacterized_protein_LOC110370848_[Helicoverpa_armigera]
4045 O_BomoMSG13641_5prime_partial:A_BomoMSG_c24437_g1_i1
200bp
4046 O_BomoMSG13642_complete:A_BomoMSG_c24437_g1_i1
143bp
4047 O_BomoMSG13643_5prime_partial:A_BomoMSG_c24437_g1_i1
100bp
4048 O_BomoMSG13644_internal:A_BomoMSG_c24437_g1_i2
359bp
 uncharacterized_protein_LOC110370848_[Helicoverpa_armigera]
4049 O_BomoMSG13645_5prime_partial:A_BomoMSG_c24437_g1_i2
200bp
4050 O_BomoMSG13646_5prime_partial:A_BomoMSG_c24437_g1_i2
100bp
previous next from show/29137

- SilkBase 1999-2023 -