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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
331 O_BomoMSG10299_5prime_partial:A_BomoMSG_c22590_g1_i1
137bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
332 O_BomoMSG1029_internal:A_BomoMSG_c4767_g1_i1
191bp
 LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009897 C external side of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
333 O_BomoMSG102_internal:A_BomoMSG_c371_g1_i1
130bp
334 O_BomoMSG10300_5prime_partial:A_BomoMSG_c22590_g1_i2
289bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
335 O_BomoMSG10301_5prime_partial:A_BomoMSG_c22590_g1_i3
268bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
336 O_BomoMSG10302_5prime_partial:A_BomoMSG_c22590_g1_i4
352bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
337 O_BomoMSG10303_internal:A_BomoMSG_c22590_g2_i1
145bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
338 O_BomoMSG10304_internal:A_BomoMSG_c22591_g1_i1
281bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0001741 C XY body
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008156 P negative regulation of DNA replication
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0032405 F MutLalpha complex binding
GO:0032407 F MutSalpha complex binding
GO:0034644 P cellular response to UV
GO:0043393 P regulation of protein binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046777 P protein autophosphorylation
GO:0070198 P protein localization to chromosome, telomeric region
GO:0071480 P cellular response to gamma radiation
GO:0090399 P replicative senescence
GO:0097694 P establishment of RNA localization to telomere
GO:1904884 P positive regulation of telomerase catalytic core complex assembly
339 O_BomoMSG10305_internal:A_BomoMSG_c22591_g1_i2
293bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000706 P meiotic DNA double-strand break processing
GO:0000723 P telomere maintenance
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007015 P actin filament organization
GO:0007088 P regulation of mitotic nuclear division
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0007275 P multicellular organism development
GO:0007348 P regulation of syncytial blastoderm mitotic cell cycle
GO:0007349 P cellularization
GO:0007444 P imaginal disc development
GO:0008360 P regulation of cell shape
GO:0009314 P response to radiation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016321 P female meiosis chromosome segregation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0030261 P chromosome condensation
GO:0031000 P response to caffeine
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0045002 P double-strand break repair via single-strand annealing
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:0048477 P oogenesis
340 O_BomoMSG10306_internal:A_BomoMSG_c22591_g1_i3
176bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0001741 C XY body
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008156 P negative regulation of DNA replication
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0032405 F MutLalpha complex binding
GO:0032407 F MutSalpha complex binding
GO:0034644 P cellular response to UV
GO:0043393 P regulation of protein binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046777 P protein autophosphorylation
GO:0070198 P protein localization to chromosome, telomeric region
GO:0071480 P cellular response to gamma radiation
GO:0090399 P replicative senescence
GO:0097694 P establishment of RNA localization to telomere
GO:1904884 P positive regulation of telomerase catalytic core complex assembly
341 O_BomoMSG10307_internal:A_BomoMSG_c22591_g1_i4
157bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0001741 C XY body
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008156 P negative regulation of DNA replication
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0032405 F MutLalpha complex binding
GO:0032407 F MutSalpha complex binding
GO:0034644 P cellular response to UV
GO:0043393 P regulation of protein binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046777 P protein autophosphorylation
GO:0070198 P protein localization to chromosome, telomeric region
GO:0071480 P cellular response to gamma radiation
GO:0090399 P replicative senescence
GO:0097694 P establishment of RNA localization to telomere
GO:1904884 P positive regulation of telomerase catalytic core complex assembly
342 O_BomoMSG10308_5prime_partial:A_BomoMSG_c22592_g1_i1
359bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
343 O_BomoMSG10309_3prime_partial:A_BomoMSG_c22594_g1_i1
228bp
 INO80_complex_subunit_E_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
344 O_BomoMSG1030_5prime_partial:A_BomoMSG_c4767_g1_i1
103bp
345 O_BomoMSG10310_complete:A_BomoMSG_c22595_g1_i1
163bp
 39S_ribosomal_protein_L41,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
346 O_BomoMSG10311_internal:A_BomoMSG_c22596_g1_i1
580bp
 atlastin_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0007019 P microtubule depolymerization
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008152 P metabolic process
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016320 P endoplasmic reticulum membrane fusion
GO:0016787 F hydrolase activity
GO:0031114 P regulation of microtubule depolymerization
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0032561 F guanyl ribonucleotide binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051260 P protein homooligomerization
GO:0061025 P membrane fusion
347 O_BomoMSG10312_5prime_partial:A_BomoMSG_c22596_g1_i1
259bp
348 O_BomoMSG10313_3prime_partial:A_BomoMSG_c22596_g1_i2
545bp
 atlastin_isoform_X4_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0007019 P microtubule depolymerization
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008152 P metabolic process
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016320 P endoplasmic reticulum membrane fusion
GO:0016787 F hydrolase activity
GO:0031114 P regulation of microtubule depolymerization
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0032561 F guanyl ribonucleotide binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051260 P protein homooligomerization
GO:0061025 P membrane fusion
349 O_BomoMSG10314_5prime_partial:A_BomoMSG_c22596_g1_i2
259bp
350 O_BomoMSG10315_internal:A_BomoMSG_c22596_g1_i3
431bp
 atlastin_isoform_X4_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0007019 P microtubule depolymerization
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008152 P metabolic process
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016320 P endoplasmic reticulum membrane fusion
GO:0016787 F hydrolase activity
GO:0031114 P regulation of microtubule depolymerization
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0032561 F guanyl ribonucleotide binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051260 P protein homooligomerization
GO:0061025 P membrane fusion
351 O_BomoMSG10316_5prime_partial:A_BomoMSG_c22596_g1_i3
259bp
352 O_BomoMSG10317_internal:A_BomoMSG_c22596_g1_i4
596bp
 atlastin_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0007019 P microtubule depolymerization
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008152 P metabolic process
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016320 P endoplasmic reticulum membrane fusion
GO:0016787 F hydrolase activity
GO:0031114 P regulation of microtubule depolymerization
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0032561 F guanyl ribonucleotide binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051260 P protein homooligomerization
GO:0061025 P membrane fusion
353 O_BomoMSG10318_5prime_partial:A_BomoMSG_c22596_g1_i4
259bp
354 O_BomoMSG10319_internal:A_BomoMSG_c22597_g1_i1
282bp
 CLIP-associating_protein_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000922 C spindle pole
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0019827 P stem cell population maintenance
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0030723 P ovarian fusome organization
GO:0031116 P positive regulation of microtubule polymerization
GO:0032154 C cleavage furrow
GO:0035099 P hemocyte migration
GO:0035371 C microtubule plus-end
GO:0040001 P establishment of mitotic spindle localization
GO:0042995 C cell projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046602 P regulation of mitotic centrosome separation
GO:0048477 P oogenesis
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
GO:0090307 P mitotic spindle assembly
355 O_BomoMSG1031_internal:A_BomoMSG_c4772_g1_i1
112bp
 fork_head_domain-containing_protein_FD4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
356 O_BomoMSG10320_3prime_partial:A_BomoMSG_c22597_g1_i1
131bp
357 O_BomoMSG10321_5prime_partial:A_BomoMSG_c22597_g1_i1
105bp
358 O_BomoMSG10322_complete:A_BomoMSG_c22601_g1_i2
534bp
 dolichyl_pyrophosphate_Man9GlcNAc2_alpha-1,3-glucosyltransferase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0006490 P oligosaccharide-lipid intermediate biosynthetic process
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
GO:0042281 F dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
359 O_BomoMSG10323_internal:A_BomoMSG_c22602_g1_i1
359bp
 myelin_regulatory_factor_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0014003 P oligodendrocyte development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0022010 P central nervous system myelination
GO:0030154 P cell differentiation
GO:0031643 P positive regulation of myelination
GO:0032286 P central nervous system myelin maintenance
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048709 P oligodendrocyte differentiation
360 O_BomoMSG10324_internal:A_BomoMSG_c22606_g1_i1
102bp
 uncharacterized_protein_LOC101739253_[Bombyx_mori]
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