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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1891 O_BomoMSG11702_5prime_partial:A_BomoMSG_c23402_g1_i2
114bp
1892 O_BomoMSG11703_5prime_partial:A_BomoMSG_c23404_g1_i1
291bp
 ubiquitin_carboxyl-terminal_hydrolase_3_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0000790 C chromatin
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
1893 O_BomoMSG11704_5prime_partial:A_BomoMSG_c23404_g1_i2
251bp
 ubiquitin_carboxyl-terminal_hydrolase_3_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0000790 C chromatin
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
1894 O_BomoMSG11705_complete:A_BomoMSG_c23405_g1_i1
261bp
 cAMP_responsive_element_binding_protein_isoform_X5_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007616 P long-term memory
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0030431 P sleep
GO:0040040 P thermosensory behavior
GO:0043565 F sequence-specific DNA binding
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0072375 P medium-term memory
GO:2000253 P positive regulation of feeding behavior
1895 O_BomoMSG11706_complete:A_BomoMSG_c23405_g1_i2
289bp
 cAMP_responsive_element_binding_protein_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0030154 P cell differentiation
GO:0033762 P response to glucagon
GO:0043565 F sequence-specific DNA binding
GO:0045600 P positive regulation of fat cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048511 P rhythmic process
GO:0050821 P protein stabilization
1896 O_BomoMSG11707_complete:A_BomoMSG_c23405_g1_i3
265bp
 cAMP_responsive_element_binding_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007616 P long-term memory
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0030431 P sleep
GO:0040040 P thermosensory behavior
GO:0043565 F sequence-specific DNA binding
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0072375 P medium-term memory
GO:2000253 P positive regulation of feeding behavior
1897 O_BomoMSG11708_complete:A_BomoMSG_c23405_g1_i4
265bp
 cAMP_responsive_element_binding_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007616 P long-term memory
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0030431 P sleep
GO:0040040 P thermosensory behavior
GO:0043565 F sequence-specific DNA binding
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0072375 P medium-term memory
GO:2000253 P positive regulation of feeding behavior
1898 O_BomoMSG11709_complete:A_BomoMSG_c23405_g1_i5
265bp
 cAMP_responsive_element_binding_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007616 P long-term memory
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0030431 P sleep
GO:0040040 P thermosensory behavior
GO:0043565 F sequence-specific DNA binding
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0072375 P medium-term memory
GO:2000253 P positive regulation of feeding behavior
1899 O_BomoMSG1170_3prime_partial:A_BomoMSG_c5475_g1_i1
134bp
 PH_domain-containing_protein_DDB_G0287875-like_isoform_X3_[Bombyx_mori]
1900 O_BomoMSG11710_complete:A_BomoMSG_c23405_g1_i6
285bp
 cAMP_responsive_element_binding_protein_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0030154 P cell differentiation
GO:0033762 P response to glucagon
GO:0043565 F sequence-specific DNA binding
GO:0045600 P positive regulation of fat cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048511 P rhythmic process
GO:0050821 P protein stabilization
1901 O_BomoMSG11711_5prime_partial:A_BomoMSG_c23407_g1_i1
105bp
1902 O_BomoMSG11712_5prime_partial:A_BomoMSG_c23410_g1_i1
238bp
 uncharacterized_protein_LOC101735588_[Bombyx_mori]
1903 O_BomoMSG11713_5prime_partial:A_BomoMSG_c23412_g1_i2
119bp
1904 O_BomoMSG11714_3prime_partial:A_BomoMSG_c23414_g1_i1
306bp
 protein_CLP1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
1905 O_BomoMSG11715_internal:A_BomoMSG_c23414_g2_i1
114bp
 protein_CLP1_homolog_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0016310 P phosphorylation
GO:0031124 P mRNA 3'-end processing
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
1906 O_BomoMSG11716_5prime_partial:A_BomoMSG_c23414_g2_i1
113bp
1907 O_BomoMSG11717_5prime_partial:A_BomoMSG_c23414_g2_i1
101bp
1908 O_BomoMSG11718_complete:A_BomoMSG_c23416_g1_i1
268bp
 uncharacterized_protein_LOC101738586_[Bombyx_mori]
1909 O_BomoMSG11719_3prime_partial:A_BomoMSG_c23417_g1_i1
268bp
 hypothetical_protein_KGM_206265_[Danaus_plexippus_plexippus]
GO:0001164 F RNA polymerase I core promoter sequence-specific DNA binding
GO:0001187 F RNA polymerase I core promoter sequence-specific DNA binding
GO:0001189 P RNA polymerase I preinitiation complex assembly
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005668 C RNA polymerase transcription factor SL1 complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070860 C RNA polymerase I core factor complex
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
1910 O_BomoMSG1171_complete:A_BomoMSG_c5476_g1_i1
323bp
 transcription_initiation_factor_IIA_subunit_1_[Bombyx_mori]
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0005672 C transcription factor TFIIA complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0017025 F TBP-class protein binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051123 P RNA polymerase II preinitiation complex assembly
1911 O_BomoMSG11720_internal:A_BomoMSG_c23418_g1_i1
412bp
 probable_RNA-binding_protein_CG14230_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
1912 O_BomoMSG11721_3prime_partial:A_BomoMSG_c23418_g2_i1
142bp
 probable_RNA-binding_protein_CG14230_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006364 P rRNA processing
GO:0030307 P positive regulation of cell growth
GO:0044822 F RNA binding
1913 O_BomoMSG11722_internal:A_BomoMSG_c23419_g1_i1
156bp
 PREDICTED:_uncharacterized_protein_LOC106102080,_partial_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
1914 O_BomoMSG11723_5prime_partial:A_BomoMSG_c23420_g2_i1
344bp
 abhydrolase_domain_containing_11_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
1915 O_BomoMSG11724_5prime_partial:A_BomoMSG_c23421_g1_i1
195bp
 uncharacterized_protein_LOC101746806_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
1916 O_BomoMSG11725_complete:A_BomoMSG_c23421_g1_i1
130bp
1917 O_BomoMSG11726_complete:A_BomoMSG_c23422_g1_i1
299bp
 spermatogenesis-associated_protein_6_isoform_X3_[Bombyx_mori]
1918 O_BomoMSG11727_5prime_partial:A_BomoMSG_c23423_g1_i2
154bp
 TATA-binding_protein-associated_factor_2N-like_[Bombyx_mori]
1919 O_BomoMSG11728_3prime_partial:A_BomoMSG_c23423_g1_i2
111bp
1920 O_BomoMSG11729_internal:A_BomoMSG_c23425_g1_i2
365bp
 replication_factor_C4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0019899 F enzyme binding
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
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