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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1831 O_BomoMSG11649_3prime_partial:A_BomoMSG_c23386_g1_i1
116bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_CG7065_[Bombyx_mori]
1832 O_BomoMSG1164_complete:A_BomoMSG_c5457_g1_i1
112bp
1833 O_BomoMSG11650_5prime_partial:A_BomoMSG_c23386_g1_i1
113bp
1834 O_BomoMSG11651_complete:A_BomoMSG_c23389_g1_i1
578bp
 nucleolar_protein_11_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
1835 O_BomoMSG11652_complete:A_BomoMSG_c23391_g1_i1
460bp
 ATP-dependent_RNA_helicase_dbp2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019899 F enzyme binding
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045069 P regulation of viral genome replication
GO:0045667 P regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048306 F calcium-dependent protein binding
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
1836 O_BomoMSG11653_complete:A_BomoMSG_c23391_g1_i1
134bp
1837 O_BomoMSG11654_complete:A_BomoMSG_c23391_g1_i1
120bp
 ATP-dependent_RNA_helicase_dbp2_isoform_X1_[Bombyx_mori]
1838 O_BomoMSG11655_complete:A_BomoMSG_c23391_g1_i2
621bp
 ATP-dependent_RNA_helicase_dbp2_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009791 P post-embryonic development
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0072358 P circulatory system development
GO:2001014 P regulation of skeletal muscle cell differentiation
1839 O_BomoMSG11656_complete:A_BomoMSG_c23391_g1_i2
134bp
1840 O_BomoMSG11657_internal:A_BomoMSG_c23393_g1_i1
311bp
 sodium/hydrogen_exchanger_8_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0006885 P regulation of pH
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015385 F sodium:proton antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035725 P sodium ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
1841 O_BomoMSG11658_internal:A_BomoMSG_c23393_g1_i2
151bp
 sodium/hydrogen_exchanger_8_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0006885 P regulation of pH
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015385 F sodium:proton antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035725 P sodium ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
1842 O_BomoMSG11659_internal:A_BomoMSG_c23393_g1_i3
125bp
 sodium/hydrogen_exchanger_8_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0006885 P regulation of pH
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015385 F sodium:proton antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035725 P sodium ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
1843 O_BomoMSG1165_3prime_partial:A_BomoMSG_c5467_g1_i1
143bp
 putative_zinc_finger_and_SCAN_domain-containing_protein_5D_[Bombyx_mori]
1844 O_BomoMSG11660_internal:A_BomoMSG_c23394_g1_i1
263bp
 ankyrin_repeat_and_sterile_alpha_motif_domain-containing_protein_1B_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046875 F ephrin receptor binding
1845 O_BomoMSG11661_3prime_partial:A_BomoMSG_c23394_g1_i1
110bp
1846 O_BomoMSG11662_5prime_partial:A_BomoMSG_c23394_g2_i1
137bp
1847 O_BomoMSG11663_5prime_partial:A_BomoMSG_c23394_g2_i2
106bp
1848 O_BomoMSG11664_complete:A_BomoMSG_c23395_g1_i1
113bp
 zinc_finger_protein_on_ecdysone_puffs_[Bombyx_mori]
1849 O_BomoMSG11665_complete:A_BomoMSG_c23395_g1_i2
573bp
 zinc_finger_protein_on_ecdysone_puffs_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1850 O_BomoMSG11666_complete:A_BomoMSG_c23395_g1_i2
138bp
1851 O_BomoMSG11667_complete:A_BomoMSG_c23395_g1_i2
137bp
1852 O_BomoMSG11668_complete:A_BomoMSG_c23395_g1_i2
103bp
1853 O_BomoMSG11669_complete:A_BomoMSG_c23395_g1_i2
102bp
1854 O_BomoMSG1166_3prime_partial:A_BomoMSG_c5467_g1_i1
127bp
1855 O_BomoMSG11670_complete:A_BomoMSG_c23395_g1_i2
101bp
1856 O_BomoMSG11671_complete:A_BomoMSG_c23395_g1_i3
669bp
 zinc_finger_protein_on_ecdysone_puffs_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1857 O_BomoMSG11672_complete:A_BomoMSG_c23395_g1_i3
137bp
1858 O_BomoMSG11673_complete:A_BomoMSG_c23395_g1_i3
128bp
1859 O_BomoMSG11674_complete:A_BomoMSG_c23395_g1_i3
102bp
1860 O_BomoMSG11675_complete:A_BomoMSG_c23395_g1_i3
101bp
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