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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12511 O_BomoMSG21260_internal:A_BomoMSG_c26875_g1_i1
260bp
 hypothetical_protein_[Escherichia_coli]
12512 O_BomoMSG21261_5prime_partial:A_BomoMSG_c26875_g1_i2
809bp
 hypothetical_protein_[Escherichia_coli]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
12513 O_BomoMSG21262_complete:A_BomoMSG_c26876_g1_i1
212bp
 synaptosomal-associated_protein_25_isoform_X3_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006893 P Golgi to plasma membrane transport
GO:0006906 P vesicle fusion
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0016020 C membrane
GO:0016081 P synaptic vesicle docking
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0031083 C BLOC-1 complex
GO:0031201 C SNARE complex
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0043005 C neuron projection
GO:0043195 C terminal bouton
GO:0045202 C synapse
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048489 P synaptic vesicle transport
12514 O_BomoMSG21263_complete:A_BomoMSG_c26876_g1_i2
212bp
 synaptosomal-associated_protein_25_isoform_X3_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006893 P Golgi to plasma membrane transport
GO:0006906 P vesicle fusion
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0016020 C membrane
GO:0016081 P synaptic vesicle docking
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0031083 C BLOC-1 complex
GO:0031201 C SNARE complex
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0043005 C neuron projection
GO:0043195 C terminal bouton
GO:0045202 C synapse
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048489 P synaptic vesicle transport
12515 O_BomoMSG21264_internal:A_BomoMSG_c26877_g1_i1
853bp
 DNA_polymerase_delta_catalytic_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0043625 C delta DNA polymerase complex
GO:0045004 P DNA replication proofreading
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12516 O_BomoMSG21265_3prime_partial:A_BomoMSG_c26878_g1_i1
476bp
 bromodomain-containing_protein_7_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016055 P Wnt signaling pathway
GO:0035066 P positive regulation of histone acetylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0070577 F lysine-acetylated histone binding
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
12517 O_BomoMSG21266_5prime_partial:A_BomoMSG_c26878_g1_i1
102bp
12518 O_BomoMSG21267_complete:A_BomoMSG_c26878_g1_i2
261bp
 bromodomain-containing_protein_7_[Bombyx_mori]
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0070577 F lysine-acetylated histone binding
12519 O_BomoMSG21268_3prime_partial:A_BomoMSG_c26878_g1_i3
131bp
 bromodomain-containing_protein_7_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0016055 P Wnt signaling pathway
12520 O_BomoMSG21269_3prime_partial:A_BomoMSG_c26878_g1_i4
337bp
 bromodomain-containing_protein_7_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0016055 P Wnt signaling pathway
12521 O_BomoMSG2126_internal:A_BomoMSG_c10138_g1_i1
106bp
 uncharacterized_protein_LOC101746950_[Bombyx_mori]
12522 O_BomoMSG21270_complete:A_BomoMSG_c26879_g2_i1
239bp
 RAB6A-GEF_complex_partner_protein_2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032588 C trans-Golgi network membrane
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:1903363 P negative regulation of cellular protein catabolic process
12523 O_BomoMSG21271_complete:A_BomoMSG_c26879_g2_i1
104bp
12524 O_BomoMSG21272_5prime_partial:A_BomoMSG_c26879_g2_i2
117bp
 RAB6A-GEF_complex_partner_protein_2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:1903363 P negative regulation of cellular protein catabolic process
12525 O_BomoMSG21273_complete:A_BomoMSG_c26879_g2_i3
386bp
 RAB6A-GEF_complex_partner_protein_2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032588 C trans-Golgi network membrane
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:1903363 P negative regulation of cellular protein catabolic process
12526 O_BomoMSG21274_complete:A_BomoMSG_c26879_g2_i3
104bp
12527 O_BomoMSG21275_5prime_partial:A_BomoMSG_c26880_g1_i2
191bp
 Golgi_resident_protein_GCP60_isoform_X2_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034237 F protein kinase A regulatory subunit binding
12528 O_BomoMSG21276_5prime_partial:A_BomoMSG_c26880_g1_i4
489bp
 Golgi_resident_protein_GCP60_isoform_X2_[Bombyx_mori]
GO:0006810 P transport
GO:0016021 C integral component of membrane
12529 O_BomoMSG21277_3prime_partial:A_BomoMSG_c26881_g1_i1
159bp
 la-related_protein_1_[Bombyx_mori]
12530 O_BomoMSG21278_5prime_partial:A_BomoMSG_c26881_g1_i1
133bp
12531 O_BomoMSG21279_5prime_partial:A_BomoMSG_c26881_g1_i1
131bp
12532 O_BomoMSG2127_3prime_partial:A_BomoMSG_c10140_g1_i1
101bp
 NADPH-dependent_diflavin_oxidoreductase_1_isoform_X2_[Bombyx_mori]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0045111 C intermediate filament cytoskeleton
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
12533 O_BomoMSG21280_3prime_partial:A_BomoMSG_c26881_g1_i2
312bp
 PREDICTED:_la-related_protein_1_isoform_X2_[Papilio_polytes]
12534 O_BomoMSG21281_5prime_partial:A_BomoMSG_c26881_g1_i2
133bp
12535 O_BomoMSG21282_5prime_partial:A_BomoMSG_c26881_g1_i2
131bp
12536 O_BomoMSG21283_complete:A_BomoMSG_c26881_g1_i2
102bp
12537 O_BomoMSG21284_3prime_partial:A_BomoMSG_c26881_g1_i3
308bp
 PREDICTED:_la-related_protein_1_isoform_X3_[Papilio_polytes]
12538 O_BomoMSG21285_5prime_partial:A_BomoMSG_c26881_g1_i3
129bp
12539 O_BomoMSG21286_5prime_partial:A_BomoMSG_c26881_g1_i3
127bp
12540 O_BomoMSG21287_complete:A_BomoMSG_c26881_g1_i3
102bp
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