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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11281 O_BomoMSG20153_complete:A_BomoMSG_c26607_g2_i1
694bp
 plastin-2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0001726 C ruffle
GO:0001891 C phagocytic cup
GO:0002102 C podosome
GO:0002286 P T cell activation involved in immune response
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0009611 P response to wounding
GO:0010737 P protein kinase A signaling
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0022617 P extracellular matrix disassembly
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0031100 P animal organ regeneration
GO:0032432 C actin filament bundle
GO:0032587 C ruffle membrane
GO:0033157 P regulation of intracellular protein transport
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0051020 F GTPase binding
GO:0070062 C extracellular exosome
GO:0071803 P positive regulation of podosome assembly
11282 O_BomoMSG20154_internal:A_BomoMSG_c26608_g1_i1
526bp
 nuclear_pore_complex_protein_Nup205_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
11283 O_BomoMSG20155_5prime_partial:A_BomoMSG_c26608_g1_i1
181bp
11284 O_BomoMSG20156_5prime_partial:A_BomoMSG_c26609_g1_i1
223bp
 MKRN2_opposite_strand_protein_[Bombyx_mori]
11285 O_BomoMSG20157_3prime_partial:A_BomoMSG_c26609_g1_i2
153bp
 MKRN2_opposite_strand_protein_[Bombyx_mori]
11286 O_BomoMSG20158_complete:A_BomoMSG_c26609_g1_i3
215bp
 MKRN2_opposite_strand_protein_[Bombyx_mori]
11287 O_BomoMSG20159_complete:A_BomoMSG_c26610_g1_i1
452bp
 zinc_finger_protein_729_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11288 O_BomoMSG2015_internal:A_BomoMSG_c9814_g1_i1
100bp
 uncharacterized_protein_LOC110370969_[Helicoverpa_armigera]
11289 O_BomoMSG20160_5prime_partial:A_BomoMSG_c26610_g1_i2
391bp
 zinc_finger_protein_729_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11290 O_BomoMSG20161_5prime_partial:A_BomoMSG_c26610_g1_i3
409bp
 zinc_finger_protein_729_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
11291 O_BomoMSG20162_5prime_partial:A_BomoMSG_c26610_g1_i4
108bp
 zinc_finger_protein_729_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007265 P Ras protein signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016604 C nuclear body
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
11292 O_BomoMSG20163_5prime_partial:A_BomoMSG_c26611_g1_i1
695bp
 ATP-dependent_RNA_helicase_DHX36_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001503 P ossification
GO:0002151 F G-quadruplex RNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009615 P response to virus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032206 P positive regulation of telomere maintenance
GO:0032481 P positive regulation of type I interferon production
GO:0042826 F histone deacetylase binding
GO:0043330 P response to exogenous dsRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051880 F G-quadruplex DNA binding
GO:0070062 C extracellular exosome
11293 O_BomoMSG20164_complete:A_BomoMSG_c26611_g1_i1
162bp
11294 O_BomoMSG20165_complete:A_BomoMSG_c26612_g1_i3
172bp
 peptidylprolyl_isomerase_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
11295 O_BomoMSG20166_complete:A_BomoMSG_c26613_g3_i1
385bp
 isocitrate_dehydrogenase_[NAD]_subunit_beta,_mitochondrial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004449 F isocitrate dehydrogenase (NAD+) activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006099 P tricarboxylic acid cycle
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
11296 O_BomoMSG20167_complete:A_BomoMSG_c26613_g5_i1
129bp
 PREDICTED:_longitudinals_lacking_protein-like_[Plutella_xylostella]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
11297 O_BomoMSG20168_complete:A_BomoMSG_c26613_g5_i2
129bp
 PREDICTED:_longitudinals_lacking_protein-like_[Plutella_xylostella]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
11298 O_BomoMSG20169_5prime_partial:A_BomoMSG_c26614_g1_i1
270bp
 developmentally-regulated_GTP-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
11299 O_BomoMSG2016_internal:A_BomoMSG_c9829_g1_i1
208bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
11300 O_BomoMSG20170_complete:A_BomoMSG_c26614_g1_i1
105bp
11301 O_BomoMSG20171_5prime_partial:A_BomoMSG_c26614_g1_i2
131bp
 developmentally-regulated_GTP-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
11302 O_BomoMSG20172_complete:A_BomoMSG_c26614_g1_i2
105bp
11303 O_BomoMSG20173_complete:A_BomoMSG_c26614_g1_i3
365bp
 developmentally-regulated_GTP-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
11304 O_BomoMSG20174_complete:A_BomoMSG_c26614_g1_i3
105bp
11305 O_BomoMSG20175_5prime_partial:A_BomoMSG_c26615_g1_i1
178bp
 transmembrane_protein_adipocyte-associated_1_homolog_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
11306 O_BomoMSG20176_complete:A_BomoMSG_c26615_g1_i2
376bp
 transmembrane_protein_adipocyte-associated_1_homolog_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
11307 O_BomoMSG20177_complete:A_BomoMSG_c26615_g1_i3
215bp
 transmembrane_protein_adipocyte-associated_1_homolog_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
11308 O_BomoMSG20178_complete:A_BomoMSG_c26616_g1_i1
132bp
 hematological_and_neurological_expressed_1_protein_[Bombyx_mori]
11309 O_BomoMSG20179_internal:A_BomoMSG_c26617_g1_i2
483bp
 homeotic_protein_female_sterile_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
11310 O_BomoMSG2017_internal:A_BomoMSG_c9836_g1_i1
108bp
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