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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10921 O_BomoMSG19830_complete:A_BomoMSG_c26530_g2_i3
337bp
 NIF3-like_protein_isoform_X1_[Bombyx_mori]
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
10922 O_BomoMSG19831_complete:A_BomoMSG_c26530_g2_i3
108bp
10923 O_BomoMSG19832_complete:A_BomoMSG_c26531_g1_i1
231bp
 E3_ubiquitin-protein_ligase_TRAIP-like_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0030521 P androgen receptor signaling pathway
GO:0031491 F nucleosome binding
GO:0032184 F SUMO polymer binding
GO:0033234 P negative regulation of protein sumoylation
GO:0033768 C SUMO-targeted ubiquitin ligase complex
GO:0042802 F identical protein binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046685 P response to arsenic-containing substance
GO:0046872 F metal ion binding
GO:0050681 F androgen receptor binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
GO:0090169 P regulation of spindle assembly
GO:0090234 P regulation of kinetochore assembly
10924 O_BomoMSG19833_complete:A_BomoMSG_c26531_g2_i1
124bp
 cytochrome_P450,_partial_[Bombyx_mori]
10925 O_BomoMSG19834_complete:A_BomoMSG_c26531_g1_i2
168bp
 E3_ubiquitin-protein_ligase_TRAIP-like_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0030521 P androgen receptor signaling pathway
GO:0031491 F nucleosome binding
GO:0032184 F SUMO polymer binding
GO:0033234 P negative regulation of protein sumoylation
GO:0033768 C SUMO-targeted ubiquitin ligase complex
GO:0042802 F identical protein binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046685 P response to arsenic-containing substance
GO:0046872 F metal ion binding
GO:0050681 F androgen receptor binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
GO:0090169 P regulation of spindle assembly
GO:0090234 P regulation of kinetochore assembly
10926 O_BomoMSG19835_complete:A_BomoMSG_c26531_g1_i3
231bp
 E3_ubiquitin-protein_ligase_TRAIP-like_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0030521 P androgen receptor signaling pathway
GO:0031491 F nucleosome binding
GO:0032184 F SUMO polymer binding
GO:0033234 P negative regulation of protein sumoylation
GO:0033768 C SUMO-targeted ubiquitin ligase complex
GO:0042802 F identical protein binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046685 P response to arsenic-containing substance
GO:0046872 F metal ion binding
GO:0050681 F androgen receptor binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
GO:0090169 P regulation of spindle assembly
GO:0090234 P regulation of kinetochore assembly
10927 O_BomoMSG19836_3prime_partial:A_BomoMSG_c26533_g1_i1
508bp
 nucleoporin_NDC1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005816 C spindle pole body
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006999 P nuclear pore organization
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007283 P spermatogenesis
GO:0015031 P protein transport
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017056 F structural constituent of nuclear pore
GO:0030474 P spindle pole body duplication
GO:0031081 P nuclear pore localization
GO:0031965 C nuclear membrane
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0070762 C nuclear pore transmembrane ring
GO:0071790 P spindle pole body localization
10928 O_BomoMSG19837_complete:A_BomoMSG_c26533_g1_i1
138bp
10929 O_BomoMSG19838_3prime_partial:A_BomoMSG_c26534_g1_i1
366bp
 1-acyl-sn-glycerol-3-phosphate_acyltransferase_gamma_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0008152 P metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019432 P triglyceride biosynthetic process
GO:0042171 F lysophosphatidic acid acyltransferase activity
10930 O_BomoMSG19839_internal:A_BomoMSG_c26535_g1_i1
137bp
 multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0002481 P antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 P antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 P antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 P positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0009986 C cell surface
GO:0015893 P xenobiotic transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042623 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0046581 C intercellular canaliculus
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:0072089 P stem cell proliferation
10931 O_BomoMSG1983_3prime_partial:A_BomoMSG_c9689_g1_i1
167bp
 Uncharacterized_protein_OBRU01_17508_[Operophtera_brumata]
10932 O_BomoMSG19840_3prime_partial:A_BomoMSG_c26535_g1_i2
153bp
 multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008354 P germ cell migration
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0015238 F xenobiotic transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031427 P response to methotrexate
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0055085 P transmembrane transport
10933 O_BomoMSG19841_5prime_partial:A_BomoMSG_c26535_g1_i2
101bp
10934 O_BomoMSG19842_3prime_partial:A_BomoMSG_c26535_g1_i3
913bp
 multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008354 P germ cell migration
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0015238 F xenobiotic transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031427 P response to methotrexate
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0055085 P transmembrane transport
10935 O_BomoMSG19843_3prime_partial:A_BomoMSG_c26535_g1_i4
294bp
 multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002481 P antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 P antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 P antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 P positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0046581 C intercellular canaliculus
GO:0055085 P transmembrane transport
10936 O_BomoMSG19844_internal:A_BomoMSG_c26535_g1_i6
206bp
 multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0055085 P transmembrane transport
10937 O_BomoMSG19845_complete:A_BomoMSG_c26536_g1_i1
244bp
 uncharacterized_protein_LOC101743829_isoform_X2_[Bombyx_mori]
10938 O_BomoMSG19846_complete:A_BomoMSG_c26536_g1_i1
201bp
10939 O_BomoMSG19847_complete:A_BomoMSG_c26536_g1_i1
124bp
10940 O_BomoMSG19848_3prime_partial:A_BomoMSG_c26537_g1_i1
314bp
 putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
10941 O_BomoMSG19849_3prime_partial:A_BomoMSG_c26537_g1_i2
594bp
 putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
10942 O_BomoMSG1984_internal:A_BomoMSG_c9694_g1_i1
351bp
 uncharacterized_protein_LOC101746732,_partial_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0002102 C podosome
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007010 P cytoskeleton organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016601 P Rac protein signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:1903955 P positive regulation of protein targeting to mitochondrion
10943 O_BomoMSG19850_internal:A_BomoMSG_c26537_g1_i3
178bp
 putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
10944 O_BomoMSG19851_3prime_partial:A_BomoMSG_c26538_g1_i1
393bp
 terminal_uridylyltransferase_Tailor-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002134 F UTP binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0030145 F manganese ion binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071044 P histone mRNA catabolic process
10945 O_BomoMSG19852_3prime_partial:A_BomoMSG_c26539_g1_i1
271bp
 protein_C12orf4_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0043304 P regulation of mast cell degranulation
10946 O_BomoMSG19853_internal:A_BomoMSG_c26539_g2_i1
278bp
 protein_C12orf4_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0043304 P regulation of mast cell degranulation
10947 O_BomoMSG19854_5prime_partial:A_BomoMSG_c26539_g2_i1
106bp
10948 O_BomoMSG19855_complete:A_BomoMSG_c26539_g2_i1
101bp
10949 O_BomoMSG19856_5prime_partial:A_BomoMSG_c26540_g1_i1
226bp
 zinc_finger_protein_837_[Bombyx_mori]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
10950 O_BomoMSG19857_5prime_partial:A_BomoMSG_c26540_g1_i1
101bp
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