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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9541 O_BomoASG18589_complete:A_BomoASG_c30261_g1_i7
107bp
9542 O_BomoASG1858_internal:A_BomoASG_c12033_g1_i1
127bp
9543 O_BomoASG18590_complete:A_BomoASG_c30261_g1_i7
104bp
9544 O_BomoASG18591_complete:A_BomoASG_c30261_g1_i7
101bp
9545 O_BomoASG18592_complete:A_BomoASG_c30261_g1_i8
1544bp
 uncharacterized_protein_LOC101740250_isoform_X4_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
9546 O_BomoASG18593_complete:A_BomoASG_c30261_g1_i8
121bp
9547 O_BomoASG18594_complete:A_BomoASG_c30261_g1_i8
117bp
9548 O_BomoASG18595_complete:A_BomoASG_c30261_g1_i8
107bp
9549 O_BomoASG18596_complete:A_BomoASG_c30261_g1_i8
104bp
9550 O_BomoASG18597_complete:A_BomoASG_c30261_g1_i8
101bp
9551 O_BomoASG18598_complete:A_BomoASG_c30262_g1_i1
253bp
 uncharacterized_protein_LOC101736860_isoform_X1_[Bombyx_mori]
9552 O_BomoASG18599_complete:A_BomoASG_c30262_g1_i2
210bp
 uncharacterized_protein_LOC101736860_isoform_X2_[Bombyx_mori]
9553 O_BomoASG1859_internal:A_BomoASG_c12050_g1_i1
155bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9554 O_BomoASG185_3prime_partial:A_BomoASG_c1507_g1_i1
108bp
 atf2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003151 P outflow tract morphogenesis
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0008134 F transcription factor binding
GO:0008140 F cAMP response element binding protein binding
GO:0009414 P response to water deprivation
GO:0016020 C membrane
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0019901 F protein kinase binding
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0032915 P positive regulation of transforming growth factor beta2 production
GO:0035497 F cAMP response element binding
GO:0035861 C site of double-strand break
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0045444 P fat cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
GO:0097186 P amelogenesis
GO:1902110 P positive regulation of mitochondrial membrane permeability involved in apoptotic process
9555 O_BomoASG18600_complete:A_BomoASG_c30264_g1_i1
340bp
 sin3_histone_deacetylase_corepressor_complex_component_SDS3_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0019899 F enzyme binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0045892 P negative regulation of transcription, DNA-templated
9556 O_BomoASG18601_complete:A_BomoASG_c30264_g1_i1
119bp
9557 O_BomoASG18602_internal:A_BomoASG_c30265_g1_i1
289bp
 Yokozuna_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9558 O_BomoASG18603_internal:A_BomoASG_c30265_g1_i2
496bp
 Yokozuna_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9559 O_BomoASG18604_complete:A_BomoASG_c30268_g1_i1
307bp
 delta(3,5)-Delta(2,4)-dienoyl-CoA_isomerase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016853 F isomerase activity
GO:0070062 C extracellular exosome
9560 O_BomoASG18605_complete:A_BomoASG_c30268_g1_i1
206bp
9561 O_BomoASG18606_internal:A_BomoASG_c30272_g1_i1
449bp
 DET1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
9562 O_BomoASG18607_complete:A_BomoASG_c30273_g1_i1
385bp
 probable_RNA_3'-terminal_phosphate_cyclase-like_protein_[Bombyx_mori]
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003963 F RNA-3'-phosphate cyclase activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0009267 P cellular response to starvation
GO:0042254 P ribosome biogenesis
9563 O_BomoASG18608_internal:A_BomoASG_c30274_g1_i1
461bp
 probable_tRNA_(uracil-O(2)-)-methyltransferase_[Helicoverpa_armigera]
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
9564 O_BomoASG18609_internal:A_BomoASG_c30274_g1_i3
341bp
 probable_tRNA_(uracil-O(2)-)-methyltransferase_[Helicoverpa_armigera]
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
9565 O_BomoASG1860_5prime_partial:A_BomoASG_c12057_g1_i1
123bp
 uncharacterized_protein_LOC110373648_[Helicoverpa_armigera]
9566 O_BomoASG18610_5prime_partial:A_BomoASG_c30276_g2_i2
108bp
9567 O_BomoASG18611_5prime_partial:A_BomoASG_c30276_g2_i3
113bp
9568 O_BomoASG18612_5prime_partial:A_BomoASG_c30277_g1_i1
366bp
 protein_CASC3_isoform_X3_[Bombyx_mori]
9569 O_BomoASG18613_5prime_partial:A_BomoASG_c30277_g1_i1
128bp
9570 O_BomoASG18614_complete:A_BomoASG_c30277_g1_i2
164bp
 protein_CASC3_isoform_X3_[Bombyx_mori]
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