SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6961 O_BomoASG16266_complete:A_BomoASG_c29393_g1_i1
157bp
6962 O_BomoASG16267_3prime_partial:A_BomoASG_c29393_g1_i2
460bp
 LOW_QUALITY_PROTEIN:_Golgi_pH_regulator_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005244 F voltage-gated ion channel activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034765 P regulation of ion transmembrane transport
6963 O_BomoASG16268_complete:A_BomoASG_c29393_g1_i2
157bp
6964 O_BomoASG16269_internal:A_BomoASG_c29394_g1_i1
453bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
6965 O_BomoASG1626_internal:A_BomoASG_c10160_g1_i1
118bp
 alpha_1-tubulin,_partial_[Sogatella_furcifera]
GO:0000166 F nucleotide binding
GO:0000235 C astral microtubule
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007052 P mitotic spindle organization
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0008152 P metabolic process
GO:0019730 P antimicrobial humoral response
GO:0045298 C tubulin complex
GO:0048471 C perinuclear region of cytoplasm
6966 O_BomoASG16270_3prime_partial:A_BomoASG_c29394_g1_i1
230bp
6967 O_BomoASG16271_5prime_partial:A_BomoASG_c29394_g1_i1
179bp
6968 O_BomoASG16272_3prime_partial:A_BomoASG_c29394_g1_i1
107bp
6969 O_BomoASG16273_3prime_partial:A_BomoASG_c29394_g1_i2
347bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
6970 O_BomoASG16274_3prime_partial:A_BomoASG_c29394_g1_i2
178bp
6971 O_BomoASG16275_complete:A_BomoASG_c29394_g1_i2
116bp
6972 O_BomoASG16276_5prime_partial:A_BomoASG_c29397_g1_i1
299bp
 rab_GTPase-binding_effector_protein_1_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0005969 C serine-pyruvate aminotransferase complex
GO:0006897 P endocytosis
GO:0006906 P vesicle fusion
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016189 P synaptic vesicle to endosome fusion
GO:0019897 C extrinsic component of plasma membrane
GO:0030742 F GTP-dependent protein binding
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0042803 F protein homodimerization activity
GO:0044308 C axonal spine
GO:0045022 P early endosome to late endosome transport
GO:0046872 F metal ion binding
GO:0055037 C recycling endosome
GO:0070062 C extracellular exosome
6973 O_BomoASG16277_5prime_partial:A_BomoASG_c29397_g1_i1
258bp
6974 O_BomoASG16278_complete:A_BomoASG_c29397_g1_i1
120bp
6975 O_BomoASG16279_complete:A_BomoASG_c29398_g1_i1
260bp
 putative_phosphatidate_phosphatase_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0006644 P phospholipid metabolic process
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007424 P open tracheal system development
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0009880 P embryonic pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019991 P septate junction assembly
GO:0035233 P germ cell repulsion
GO:0035234 P ectopic germ cell programmed cell death
GO:0042577 F lipid phosphatase activity
GO:0042803 F protein homodimerization activity
GO:0045177 C apical part of cell
GO:0045824 P negative regulation of innate immune response
GO:0046839 P phospholipid dephosphorylation
GO:0050829 P defense response to Gram-negative bacterium
6976 O_BomoASG1627_internal:A_BomoASG_c10161_g1_i1
126bp
 zinc_finger_protein_OZF_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6977 O_BomoASG16280_complete:A_BomoASG_c29398_g1_i1
106bp
6978 O_BomoASG16281_complete:A_BomoASG_c29398_g1_i2
268bp
 putative_phosphatidate_phosphatase_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0006644 P phospholipid metabolic process
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007424 P open tracheal system development
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0009880 P embryonic pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019991 P septate junction assembly
GO:0035233 P germ cell repulsion
GO:0035234 P ectopic germ cell programmed cell death
GO:0042577 F lipid phosphatase activity
GO:0042803 F protein homodimerization activity
GO:0045177 C apical part of cell
GO:0045824 P negative regulation of innate immune response
GO:0046839 P phospholipid dephosphorylation
GO:0050829 P defense response to Gram-negative bacterium
6979 O_BomoASG16282_complete:A_BomoASG_c29398_g1_i2
106bp
6980 O_BomoASG16283_5prime_partial:A_BomoASG_c29398_g1_i3
263bp
 putative_phosphatidate_phosphatase_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0006644 P phospholipid metabolic process
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007424 P open tracheal system development
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0009880 P embryonic pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019991 P septate junction assembly
GO:0035233 P germ cell repulsion
GO:0035234 P ectopic germ cell programmed cell death
GO:0042577 F lipid phosphatase activity
GO:0042803 F protein homodimerization activity
GO:0045177 C apical part of cell
GO:0045824 P negative regulation of innate immune response
GO:0046839 P phospholipid dephosphorylation
GO:0050829 P defense response to Gram-negative bacterium
6981 O_BomoASG16284_complete:A_BomoASG_c29398_g1_i3
106bp
6982 O_BomoASG16285_complete:A_BomoASG_c29399_g1_i1
268bp
 diphthine_methyl_ester_synthase_[Bombyx_mori]
GO:0004164 F diphthine synthase activity
GO:0005575 C cellular_component
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0032259 P methylation
6983 O_BomoASG16286_5prime_partial:A_BomoASG_c29401_g1_i1
523bp
 peptide_transporter_family_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005427 F proton-dependent oligopeptide secondary active transmembrane transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006857 P oligopeptide transport
GO:0015031 P protein transport
GO:0015198 F oligopeptide transmembrane transporter activity
GO:0015833 P peptide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035672 P oligopeptide transmembrane transport
6984 O_BomoASG16287_5prime_partial:A_BomoASG_c29402_g1_i1
712bp
 F-box/WD_repeat-containing_protein_7_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0007096 P regulation of exit from mitosis
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0030162 P regulation of proteolysis
GO:0030332 F cyclin binding
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0035147 P branch fusion, open tracheal system
GO:0042023 P DNA endoreduplication
GO:0045926 P negative regulation of growth
GO:0060253 P negative regulation of glial cell proliferation
GO:0060438 P trachea development
GO:0071456 P cellular response to hypoxia
GO:1900038 P negative regulation of cellular response to hypoxia
GO:1903146 P regulation of autophagy of mitochondrion
6985 O_BomoASG16288_complete:A_BomoASG_c29402_g1_i1
116bp
6986 O_BomoASG16289_5prime_partial:A_BomoASG_c29402_g1_i2
389bp
 F-box/WD_repeat-containing_protein_7_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0007096 P regulation of exit from mitosis
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0030162 P regulation of proteolysis
GO:0030332 F cyclin binding
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0035147 P branch fusion, open tracheal system
GO:0042023 P DNA endoreduplication
GO:0045926 P negative regulation of growth
GO:0060253 P negative regulation of glial cell proliferation
GO:0060438 P trachea development
GO:0071456 P cellular response to hypoxia
GO:1900038 P negative regulation of cellular response to hypoxia
GO:1903146 P regulation of autophagy of mitochondrion
6987 O_BomoASG1628_internal:A_BomoASG_c10185_g1_i1
111bp
 uncharacterized_protein_LOC105842651,_partial_[Bombyx_mori]
6988 O_BomoASG16290_internal:A_BomoASG_c29403_g1_i1
432bp
 ionotropic_receptor_93a_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
6989 O_BomoASG16291_complete:A_BomoASG_c29403_g2_i1
147bp
 E3_ubiquitin-protein_ligase_RNF181_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
6990 O_BomoASG16292_complete:A_BomoASG_c29403_g1_i2
128bp
 ionotropic_receptor_93a_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0008150 P biological_process
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021707 P cerebellar granule cell differentiation
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0034220 P ion transmembrane transport
GO:0034613 P cellular protein localization
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
previous next from show/32479

- SilkBase 1999-2023 -