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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6601 O_BomoASG15942_complete:A_BomoASG_c29261_g1_i2
328bp
 histone_deacetylase_8_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000228 C nuclear chromosome
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006333 P chromatin assembly or disassembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007062 P sister chromatid cohesion
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0030544 F Hsp70 protein binding
GO:0031397 P negative regulation of protein ubiquitination
GO:0031647 P regulation of protein stability
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032204 P regulation of telomere maintenance
GO:0046872 F metal ion binding
GO:0051879 F Hsp90 protein binding
GO:0070932 P histone H3 deacetylation
GO:0071922 P regulation of cohesin loading
6602 O_BomoASG15943_5prime_partial:A_BomoASG_c29261_g1_i5
166bp
 histone_deacetylase_8_[Bombyx_mori]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046872 F metal ion binding
GO:0070932 P histone H3 deacetylation
6603 O_BomoASG15944_5prime_partial:A_BomoASG_c29261_g1_i6
141bp
 histone_deacetylase_8_[Bombyx_mori]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046872 F metal ion binding
GO:0070932 P histone H3 deacetylation
6604 O_BomoASG15945_5prime_partial:A_BomoASG_c29263_g1_i1
156bp
 uncharacterized_protein_LOC101737721_[Bombyx_mori]
6605 O_BomoASG15946_5prime_partial:A_BomoASG_c29263_g1_i2
136bp
 uncharacterized_protein_LOC101737721_[Bombyx_mori]
6606 O_BomoASG15947_3prime_partial:A_BomoASG_c29264_g1_i1
184bp
 U11/U12_small_nuclear_ribonucleoprotein_35_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0017069 F snRNA binding
GO:0071011 C precatalytic spliceosome
6607 O_BomoASG15948_5prime_partial:A_BomoASG_c29264_g1_i1
101bp
6608 O_BomoASG15949_5prime_partial:A_BomoASG_c29264_g1_i2
101bp
6609 O_BomoASG1594_complete:A_BomoASG_c9874_g1_i1
128bp
 DNA-directed_RNA_polymerase_II_subunit_RPB9_[Bombyx_mori]
GO:0001193 P maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005730 C nucleolus
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007067 P mitotic cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008270 F zinc ion binding
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
6610 O_BomoASG15950_complete:A_BomoASG_c29265_g1_i1
430bp
 chitinase-3-like_protein_1_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008061 F chitin binding
GO:0009612 P response to mechanical stimulus
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0030246 F carbohydrate binding
GO:0030324 P lung development
GO:0034612 P response to tumor necrosis factor
GO:0045766 P positive regulation of angiogenesis
GO:0048471 C perinuclear region of cytoplasm
GO:0051216 P cartilage development
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0070555 P response to interleukin-1
GO:0070741 P response to interleukin-6
GO:0071347 P cellular response to interleukin-1
GO:0071356 P cellular response to tumor necrosis factor
GO:0072606 P interleukin-8 production
6611 O_BomoASG15951_complete:A_BomoASG_c29266_g1_i1
214bp
 ras-related_GTP-binding_protein_Rab11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0000922 C spindle pole
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005813 C centrosome
GO:0005828 C kinetochore microtubule
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0010796 P regulation of multivesicular body size
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030133 C transport vesicle
GO:0030424 C axon
GO:0030953 P astral microtubule organization
GO:0031175 P neuron projection development
GO:0031410 C cytoplasmic vesicle
GO:0031489 F myosin V binding
GO:0031982 C vesicle
GO:0032154 C cleavage furrow
GO:0032402 P melanosome transport
GO:0036258 P multivesicular body assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0045773 P positive regulation of axon extension
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0051223 P regulation of protein transport
GO:0051650 P establishment of vesicle localization
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0060627 P regulation of vesicle-mediated transport
GO:0070062 C extracellular exosome
GO:0072594 P establishment of protein localization to organelle
GO:0072659 P protein localization to plasma membrane
GO:0090150 P establishment of protein localization to membrane
GO:0090307 P mitotic spindle assembly
GO:1990182 P exosomal secretion
6612 O_BomoASG15952_complete:A_BomoASG_c29267_g1_i1
308bp
 complex_I_intermediate-associated_protein_30,_mitochondrial_[Bombyx_mori]
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006119 P oxidative phosphorylation
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0007005 P mitochondrion organization
GO:0009408 P response to heat
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0042594 P response to starvation
GO:0051082 F unfolded protein binding
GO:0055093 P response to hyperoxia
6613 O_BomoASG15953_5prime_partial:A_BomoASG_c29268_g1_i1
912bp
 AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0016575 P histone deacetylation
GO:0017053 C transcription repressor complex
GO:0034773 P histone H4-K20 trimethylation
GO:0036124 P histone H3-K9 trimethylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048821 P erythrocyte development
GO:0080182 P histone H3-K4 trimethylation
GO:0097368 P establishment of Sertoli cell barrier
6614 O_BomoASG15954_complete:A_BomoASG_c29268_g1_i1
354bp
6615 O_BomoASG15955_complete:A_BomoASG_c29268_g1_i2
813bp
 AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0016575 P histone deacetylation
GO:0017053 C transcription repressor complex
GO:0034773 P histone H4-K20 trimethylation
GO:0036124 P histone H3-K9 trimethylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048821 P erythrocyte development
GO:0080182 P histone H3-K4 trimethylation
GO:0097368 P establishment of Sertoli cell barrier
6616 O_BomoASG15956_complete:A_BomoASG_c29268_g1_i2
354bp
6617 O_BomoASG15957_internal:A_BomoASG_c29268_g1_i3
1066bp
 AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0016575 P histone deacetylation
GO:0017053 C transcription repressor complex
GO:0034773 P histone H4-K20 trimethylation
GO:0036124 P histone H3-K9 trimethylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048821 P erythrocyte development
GO:0080182 P histone H3-K4 trimethylation
GO:0097368 P establishment of Sertoli cell barrier
6618 O_BomoASG15958_complete:A_BomoASG_c29268_g1_i3
354bp
6619 O_BomoASG15959_complete:A_BomoASG_c29268_g1_i3
161bp
6620 O_BomoASG1595_5prime_partial:A_BomoASG_c9877_g1_i1
164bp
 zinc_finger_protein_675_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
6621 O_BomoASG15960_5prime_partial:A_BomoASG_c29268_g1_i3
128bp
6622 O_BomoASG15961_5prime_partial:A_BomoASG_c29268_g1_i4
144bp
 AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
6623 O_BomoASG15962_complete:A_BomoASG_c29269_g1_i1
104bp
6624 O_BomoASG15963_5prime_partial:A_BomoASG_c29269_g1_i1
104bp
6625 O_BomoASG15964_complete:A_BomoASG_c29271_g1_i1
177bp
 uncharacterized_protein_LOC101741255_[Bombyx_mori]
6626 O_BomoASG15965_3prime_partial:A_BomoASG_c29271_g1_i1
100bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6627 O_BomoASG15966_complete:A_BomoASG_c29271_g1_i2
177bp
 uncharacterized_protein_LOC101741255_[Bombyx_mori]
6628 O_BomoASG15967_3prime_partial:A_BomoASG_c29271_g1_i2
100bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6629 O_BomoASG15968_5prime_partial:A_BomoASG_c29275_g1_i1
132bp
 uncharacterized_protein_LOC101745796_[Bombyx_mori]
6630 O_BomoASG15969_5prime_partial:A_BomoASG_c29275_g2_i1
519bp
 uncharacterized_protein_LOC101745796_[Bombyx_mori]
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