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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6391 O_BomoASG15753_3prime_partial:A_BomoASG_c29205_g1_i1
323bp
 Yokozuna_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
6392 O_BomoASG15754_complete:A_BomoASG_c29207_g1_i1
116bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6393 O_BomoASG15755_5prime_partial:A_BomoASG_c29207_g1_i2
154bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6394 O_BomoASG15756_5prime_partial:A_BomoASG_c29207_g1_i3
521bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6395 O_BomoASG15757_complete:A_BomoASG_c29207_g1_i3
113bp
6396 O_BomoASG15758_5prime_partial:A_BomoASG_c29209_g1_i1
108bp
6397 O_BomoASG15759_internal:A_BomoASG_c29210_g1_i1
214bp
 mitochondrial_dicarboxylate_carrier_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006817 P phosphate ion transport
GO:0006839 P mitochondrial transport
GO:0008272 P sulfate transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015117 F thiosulfate transmembrane transporter activity
GO:0015140 F malate transmembrane transporter activity
GO:0015141 F succinate transmembrane transporter activity
GO:0015291 F secondary active transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015709 P thiosulfate transport
GO:0015743 P malate transport
GO:0015744 P succinate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
GO:0071422 P succinate transmembrane transport
GO:0071423 P malate transmembrane transport
GO:1902358 P sulfate transmembrane transport
6398 O_BomoASG1575_complete:A_BomoASG_c9667_g1_i1
249bp
 triosephosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0004807 F triose-phosphate isomerase activity
GO:0005575 C cellular_component
GO:0006094 P gluconeogenesis
GO:0006096 P glycolytic process
GO:0006098 P pentose-phosphate shunt
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
6399 O_BomoASG15760_3prime_partial:A_BomoASG_c29210_g1_i2
271bp
 mitochondrial_dicarboxylate_carrier_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006817 P phosphate ion transport
GO:0006839 P mitochondrial transport
GO:0008272 P sulfate transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015117 F thiosulfate transmembrane transporter activity
GO:0015140 F malate transmembrane transporter activity
GO:0015141 F succinate transmembrane transporter activity
GO:0015291 F secondary active transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015709 P thiosulfate transport
GO:0015743 P malate transport
GO:0015744 P succinate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
GO:0071422 P succinate transmembrane transport
GO:0071423 P malate transmembrane transport
GO:1902358 P sulfate transmembrane transport
6400 O_BomoASG15761_complete:A_BomoASG_c29211_g1_i1
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6401 O_BomoASG15762_complete:A_BomoASG_c29211_g1_i1
105bp
6402 O_BomoASG15763_complete:A_BomoASG_c29211_g1_i1
103bp
6403 O_BomoASG15764_complete:A_BomoASG_c29211_g1_i2
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6404 O_BomoASG15765_complete:A_BomoASG_c29211_g1_i2
105bp
6405 O_BomoASG15766_complete:A_BomoASG_c29211_g1_i2
103bp
6406 O_BomoASG15767_complete:A_BomoASG_c29211_g1_i3
515bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0016020 C membrane
6407 O_BomoASG15768_complete:A_BomoASG_c29211_g1_i3
105bp
6408 O_BomoASG15769_complete:A_BomoASG_c29211_g1_i3
103bp
6409 O_BomoASG1576_complete:A_BomoASG_c9667_g1_i2
249bp
 triosephosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0004807 F triose-phosphate isomerase activity
GO:0005575 C cellular_component
GO:0006094 P gluconeogenesis
GO:0006096 P glycolytic process
GO:0006098 P pentose-phosphate shunt
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
6410 O_BomoASG15770_complete:A_BomoASG_c29211_g1_i4
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6411 O_BomoASG15771_complete:A_BomoASG_c29211_g1_i4
105bp
6412 O_BomoASG15772_complete:A_BomoASG_c29211_g1_i4
103bp
6413 O_BomoASG15773_complete:A_BomoASG_c29211_g1_i5
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6414 O_BomoASG15774_complete:A_BomoASG_c29211_g1_i5
105bp
6415 O_BomoASG15775_complete:A_BomoASG_c29211_g1_i5
103bp
6416 O_BomoASG15776_internal:A_BomoASG_c29213_g1_i2
486bp
 DNA_helicase_MCM9-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0097362 C MCM8-MCM9 complex
6417 O_BomoASG15777_3prime_partial:A_BomoASG_c29215_g1_i1
395bp
 terminal_uridylyltransferase_Tailor-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002134 F UTP binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0030145 F manganese ion binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071044 P histone mRNA catabolic process
6418 O_BomoASG15778_internal:A_BomoASG_c29216_g1_i2
150bp
 cysteine_protease_ATG4D_isoform_X1_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000422 P autophagy of mitochondrion
GO:0004197 F cysteine-type endopeptidase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006501 P C-terminal protein lipidation
GO:0006508 P proteolysis
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0015031 P protein transport
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0044804 P autophagy of nucleus
GO:0051697 P protein delipidation
6419 O_BomoASG15779_3prime_partial:A_BomoASG_c29216_g1_i3
245bp
 cysteine_protease_ATG4D_isoform_X1_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000422 P autophagy of mitochondrion
GO:0004197 F cysteine-type endopeptidase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006501 P C-terminal protein lipidation
GO:0006508 P proteolysis
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0015031 P protein transport
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0044804 P autophagy of nucleus
GO:0051697 P protein delipidation
6420 O_BomoASG1577_complete:A_BomoASG_c9683_g1_i1
794bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
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