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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5041 O_BomoASG14538_complete:A_BomoASG_c28698_g1_i3
900bp
 aubergine_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5042 O_BomoASG14539_complete:A_BomoASG_c28698_g1_i3
128bp
5043 O_BomoASG1453_internal:A_BomoASG_c9128_g1_i1
115bp
 arf-GAP_with_dual_PH_domain-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0043087 P regulation of GTPase activity
GO:0043533 F inositol 1,3,4,5 tetrakisphosphate binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
5044 O_BomoASG14540_complete:A_BomoASG_c28698_g1_i3
103bp
5045 O_BomoASG14541_complete:A_BomoASG_c28698_g1_i4
271bp
 aubergine_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5046 O_BomoASG14542_internal:A_BomoASG_c28699_g1_i1
445bp
 kelch-like_ECH-associated_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
5047 O_BomoASG14543_complete:A_BomoASG_c28699_g1_i1
122bp
5048 O_BomoASG14544_5prime_partial:A_BomoASG_c28700_g1_i1
270bp
 eukaryotic_translation_initiation_factor_4E_transporter_[Bombyx_mori]
5049 O_BomoASG14545_5prime_partial:A_BomoASG_c28700_g1_i1
179bp
5050 O_BomoASG14546_5prime_partial:A_BomoASG_c28700_g1_i1
107bp
5051 O_BomoASG14547_complete:A_BomoASG_c28701_g1_i1
673bp
 arginine/serine-rich_protein_PNISR_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
5052 O_BomoASG14548_complete:A_BomoASG_c28701_g1_i1
161bp
5053 O_BomoASG14549_complete:A_BomoASG_c28701_g1_i1
152bp
5054 O_BomoASG1454_internal:A_BomoASG_c9132_g1_i1
113bp
 Esterase-like_protein_(ESR-LP),_partial_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
5055 O_BomoASG14550_complete:A_BomoASG_c28701_g1_i1
125bp
5056 O_BomoASG14551_complete:A_BomoASG_c28701_g1_i2
408bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
5057 O_BomoASG14552_complete:A_BomoASG_c28701_g1_i2
318bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
5058 O_BomoASG14553_complete:A_BomoASG_c28701_g1_i2
161bp
5059 O_BomoASG14554_complete:A_BomoASG_c28701_g1_i2
152bp
5060 O_BomoASG14555_complete:A_BomoASG_c28701_g1_i2
125bp
5061 O_BomoASG14556_complete:A_BomoASG_c28701_g1_i3
424bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
5062 O_BomoASG14557_complete:A_BomoASG_c28701_g1_i3
266bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
5063 O_BomoASG14558_complete:A_BomoASG_c28701_g1_i3
161bp
5064 O_BomoASG14559_complete:A_BomoASG_c28701_g1_i3
152bp
5065 O_BomoASG1455_5prime_partial:A_BomoASG_c9138_g1_i1
146bp
5066 O_BomoASG14560_complete:A_BomoASG_c28701_g1_i3
125bp
5067 O_BomoASG14561_complete:A_BomoASG_c28701_g1_i4
408bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
5068 O_BomoASG14562_complete:A_BomoASG_c28701_g1_i4
266bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
5069 O_BomoASG14563_complete:A_BomoASG_c28701_g1_i4
161bp
5070 O_BomoASG14564_complete:A_BomoASG_c28701_g1_i4
152bp
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