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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4951 O_BomoASG14457_5prime_partial:A_BomoASG_c28650_g1_i1
123bp
4952 O_BomoASG14458_internal:A_BomoASG_c28650_g1_i2
133bp
 MKRN2_opposite_strand_protein_[Bombyx_mori]
4953 O_BomoASG14459_5prime_partial:A_BomoASG_c28650_g1_i2
123bp
4954 O_BomoASG1445_internal:A_BomoASG_c9058_g1_i1
111bp
 uncharacterized_protein_LOC110385579_[Bombyx_mori]
4955 O_BomoASG14460_3prime_partial:A_BomoASG_c28651_g1_i1
509bp
 nuclear_hormone_receptor_HR96_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008270 F zinc ion binding
GO:0010906 P regulation of glucose metabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0042594 P response to starvation
GO:0042632 P cholesterol homeostasis
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0070328 P triglyceride homeostasis
GO:0070873 P regulation of glycogen metabolic process
4956 O_BomoASG14461_complete:A_BomoASG_c28651_g1_i1
125bp
4957 O_BomoASG14462_5prime_partial:A_BomoASG_c28651_g1_i1
111bp
4958 O_BomoASG14463_3prime_partial:A_BomoASG_c28651_g1_i2
119bp
 nuclear_hormone_receptor_HR96_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008270 F zinc ion binding
GO:0010906 P regulation of glucose metabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0042594 P response to starvation
GO:0042632 P cholesterol homeostasis
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0070328 P triglyceride homeostasis
GO:0070873 P regulation of glycogen metabolic process
4959 O_BomoASG14464_5prime_partial:A_BomoASG_c28651_g1_i2
111bp
4960 O_BomoASG14465_5prime_partial:A_BomoASG_c28653_g1_i1
171bp
 splicing_factor_3A_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4961 O_BomoASG14466_3prime_partial:A_BomoASG_c28653_g1_i1
126bp
4962 O_BomoASG14467_internal:A_BomoASG_c28654_g1_i1
105bp
4963 O_BomoASG14468_internal:A_BomoASG_c28654_g1_i1
105bp
 LOW_QUALITY_PROTEIN:_V-type_proton_ATPase_116_kDa_subunit_a_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007035 P vacuolar acidification
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016471 C vacuolar proton-transporting V-type ATPase complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051117 F ATPase binding
GO:0070072 P vacuolar proton-transporting V-type ATPase complex assembly
4964 O_BomoASG14469_internal:A_BomoASG_c28654_g1_i2
145bp
 LOW_QUALITY_PROTEIN:_V-type_proton_ATPase_116_kDa_subunit_a_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007035 P vacuolar acidification
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016471 C vacuolar proton-transporting V-type ATPase complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051117 F ATPase binding
GO:0070072 P vacuolar proton-transporting V-type ATPase complex assembly
4965 O_BomoASG1446_internal:A_BomoASG_c9072_g1_i1
101bp
 putative_glycerol_kinase_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004370 F glycerol kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006071 P glycerol metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0019563 P glycerol catabolic process
4966 O_BomoASG14470_internal:A_BomoASG_c28654_g2_i1
280bp
 LOW_QUALITY_PROTEIN:_V-type_proton_ATPase_116_kDa_subunit_a_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
4967 O_BomoASG14471_internal:A_BomoASG_c28654_g2_i2
452bp
 LOW_QUALITY_PROTEIN:_V-type_proton_ATPase_116_kDa_subunit_a_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
4968 O_BomoASG14472_complete:A_BomoASG_c28659_g1_i1
202bp
 transmembrane_protein_267_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4969 O_BomoASG14473_internal:A_BomoASG_c28660_g1_i1
153bp
 esterase_E4_isoform_X2_[Bombyx_mori]
GO:0004453 F juvenile-hormone esterase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
4970 O_BomoASG14474_complete:A_BomoASG_c28661_g1_i1
107bp
 uncharacterized_protein_LOC101743114_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
4971 O_BomoASG14475_complete:A_BomoASG_c28661_g1_i2
107bp
 uncharacterized_protein_LOC101743114_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
4972 O_BomoASG14476_5prime_partial:A_BomoASG_c28662_g1_i2
122bp
 protein_fem-1_homolog_CG6966_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0016567 P protein ubiquitination
GO:0051438 P regulation of ubiquitin-protein transferase activity
4973 O_BomoASG14477_internal:A_BomoASG_c28663_g1_i1
294bp
 cuticular_protein_RR-2_motif_90_isoform_X1_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
4974 O_BomoASG14478_5prime_partial:A_BomoASG_c28663_g1_i1
174bp
4975 O_BomoASG14479_complete:A_BomoASG_c28664_g1_i3
122bp
4976 O_BomoASG1447_internal:A_BomoASG_c9090_g1_i1
112bp
 helicase_POLQ-like_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0051260 P protein homooligomerization
GO:0051575 F 5'-deoxyribose-5-phosphate lyase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
GO:2000042 P negative regulation of double-strand break repair via homologous recombination
4977 O_BomoASG14480_complete:A_BomoASG_c28665_g1_i1
379bp
 alpha-methylacyl-CoA_racemase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0006631 P fatty acid metabolic process
GO:0006699 P bile acid biosynthetic process
GO:0008111 F alpha-methylacyl-CoA racemase activity
GO:0008206 P bile acid metabolic process
GO:0008300 P isoprenoid catabolic process
GO:0016853 F isomerase activity
4978 O_BomoASG14481_complete:A_BomoASG_c28666_g1_i1
1017bp
 Metalloprotease_[Operophtera_brumata]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4979 O_BomoASG14482_5prime_partial:A_BomoASG_c28666_g1_i2
549bp
 LOW_QUALITY_PROTEIN:_presequence_protease,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4980 O_BomoASG14483_complete:A_BomoASG_c28667_g1_i1
116bp
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