SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
421 O_BomoASG1037_complete:A_BomoASG_c6469_g1_i1
127bp
 profilin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
422 O_BomoASG10380_complete:A_BomoASG_c26271_g1_i1
169bp
423 O_BomoASG10381_complete:A_BomoASG_c26271_g1_i2
362bp
 casein_kinase_I_alpha_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000902 P cell morphogenesis
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030529 C ribonucleoprotein complex
GO:0030877 C beta-catenin destruction complex
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0045095 C keratin filament
GO:0045104 P intermediate filament cytoskeleton organization
GO:0051301 P cell division
GO:0072372 C cilium
GO:1904424 P regulation of GTP binding
424 O_BomoASG10382_complete:A_BomoASG_c26271_g1_i2
169bp
425 O_BomoASG10383_internal:A_BomoASG_c26273_g1_i1
117bp
426 O_BomoASG10384_internal:A_BomoASG_c26273_g1_i1
117bp
 FERM_domain-containing_protein_5_isoform_X1_[Bombyx_mori]
427 O_BomoASG10385_internal:A_BomoASG_c26274_g1_i1
266bp
 zinc_finger_protein_432_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
428 O_BomoASG10386_5prime_partial:A_BomoASG_c26275_g1_i1
187bp
429 O_BomoASG10387_5prime_partial:A_BomoASG_c26275_g1_i1
177bp
 1-phosphatidylinositol_3-phosphate_5-kinase_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000285 F 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016307 F phosphatidylinositol phosphate kinase activity
GO:0016308 F 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0046488 P phosphatidylinositol metabolic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0097352 P autophagosome maturation
430 O_BomoASG10388_internal:A_BomoASG_c26280_g1_i2
478bp
 organic_cation_transporter_protein_isoform_X1_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
431 O_BomoASG10389_internal:A_BomoASG_c26281_g1_i1
129bp
 uncharacterized_protein_LOC101738796_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001755 P neural crest cell migration
GO:0001756 P somitogenesis
GO:0001843 P neural tube closure
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0019208 F phosphatase regulator activity
GO:0021540 P corpus callosum morphogenesis
GO:0021766 P hippocampus development
GO:0021846 P cell proliferation in forebrain
GO:0021957 P corticospinal tract morphogenesis
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0043507 P positive regulation of JUN kinase activity
GO:0045636 P positive regulation of melanocyte differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048023 P positive regulation of melanin biosynthetic process
GO:0048066 P developmental pigmentation
GO:0048598 P embryonic morphogenesis
GO:0048668 P collateral sprouting
GO:0050772 P positive regulation of axonogenesis
GO:0061373 P mammillary axonal complex development
GO:0070412 F R-SMAD binding
GO:0097324 P melanocyte migration
GO:1902748 P positive regulation of lens fiber cell differentiation
GO:1903056 P regulation of melanosome organization
432 O_BomoASG1038_complete:A_BomoASG_c6470_g1_i1
280bp
 methylthioribose-1-phosphate_isomerase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016853 F isomerase activity
GO:0019284 P L-methionine salvage from S-adenosylmethionine
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0044237 P cellular metabolic process
GO:0044249 P cellular biosynthetic process
GO:0046523 F S-methyl-5-thioribose-1-phosphate isomerase activity
433 O_BomoASG10390_internal:A_BomoASG_c26281_g2_i1
209bp
 uncharacterized_protein_LOC101738796_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
434 O_BomoASG10391_complete:A_BomoASG_c26283_g1_i1
294bp
 clavesin-2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
435 O_BomoASG10392_internal:A_BomoASG_c26285_g1_i1
692bp
 teneurin-a_isoform_X1_[Bombyx_mori]
GO:0001941 P postsynaptic membrane organization
GO:0003824 F catalytic activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0030054 C cell junction
GO:0030424 C axon
GO:0031594 C neuromuscular junction
GO:0034110 P regulation of homotypic cell-cell adhesion
GO:0034116 P positive regulation of heterotypic cell-cell adhesion
GO:0040017 P positive regulation of locomotion
GO:0042734 C presynaptic membrane
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0046982 F protein heterodimerization activity
GO:0048036 P central complex development
GO:0048499 P synaptic vesicle membrane organization
GO:0048786 C presynaptic active zone
GO:0048788 C cytoskeleton of presynaptic active zone
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050808 P synapse organization
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0097090 P presynaptic membrane organization
GO:2000331 P regulation of terminal button organization
436 O_BomoASG10393_internal:A_BomoASG_c26285_g1_i2
669bp
 teneurin-a_isoform_X4_[Bombyx_mori]
GO:0001941 P postsynaptic membrane organization
GO:0003824 F catalytic activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0030054 C cell junction
GO:0030424 C axon
GO:0031594 C neuromuscular junction
GO:0034110 P regulation of homotypic cell-cell adhesion
GO:0034116 P positive regulation of heterotypic cell-cell adhesion
GO:0040017 P positive regulation of locomotion
GO:0042734 C presynaptic membrane
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0046982 F protein heterodimerization activity
GO:0048036 P central complex development
GO:0048499 P synaptic vesicle membrane organization
GO:0048786 C presynaptic active zone
GO:0048788 C cytoskeleton of presynaptic active zone
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050808 P synapse organization
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0097090 P presynaptic membrane organization
GO:2000331 P regulation of terminal button organization
437 O_BomoASG10394_internal:A_BomoASG_c26288_g1_i1
306bp
 RNA_polymerase-associated_protein_CTR9_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
438 O_BomoASG10395_internal:A_BomoASG_c26288_g1_i1
306bp
 putative_acetyltransferase-like_protein_[Gregarina_niphandrodes]
439 O_BomoASG10396_internal:A_BomoASG_c26288_g1_i1
305bp
440 O_BomoASG10397_5prime_partial:A_BomoASG_c26288_g1_i1
116bp
441 O_BomoASG10398_complete:A_BomoASG_c26289_g1_i1
243bp
 FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007155 P cell adhesion
GO:0008092 F cytoskeletal protein binding
GO:0016322 P neuron remodeling
GO:0016601 P Rac protein signal transduction
GO:0019898 C extrinsic component of membrane
GO:0030316 P osteoclast differentiation
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0033623 P regulation of integrin activation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071800 P podosome assembly
442 O_BomoASG10399_complete:A_BomoASG_c26289_g1_i1
153bp
443 O_BomoASG1039_3prime_partial:A_BomoASG_c6473_g1_i1
529bp
 protein_wntless_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0017147 F Wnt-protein binding
GO:0030054 C cell junction
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0030285 C integral component of synaptic vesicle membrane
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031228 C intrinsic component of Golgi membrane
GO:0031302 C intrinsic component of endosome membrane
GO:0031594 C neuromuscular junction
GO:0033157 P regulation of intracellular protein transport
GO:0042734 C presynaptic membrane
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050714 P positive regulation of protein secretion
444 O_BomoASG103_3prime_partial:A_BomoASG_c610_g1_i1
106bp
 alpha_amylase_precursor_[Bombyx_mori]
GO:0000023 P maltose metabolic process
GO:0003824 F catalytic activity
GO:0004558 F alpha-1,4-glucosidase activity
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0032450 F maltose alpha-glucosidase activity
GO:0043169 F cation binding
445 O_BomoASG10400_5prime_partial:A_BomoASG_c26289_g1_i2
422bp
 FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007416 P synapse assembly
GO:0008092 F cytoskeletal protein binding
GO:0010923 P negative regulation of phosphatase activity
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0030425 C dendrite
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043197 C dendritic spine
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048813 P dendrite morphogenesis
446 O_BomoASG10401_complete:A_BomoASG_c26289_g1_i2
153bp
447 O_BomoASG10402_3prime_partial:A_BomoASG_c26292_g1_i1
281bp
 uncharacterized_protein_LOC101743413_isoform_X3_[Bombyx_mori]
448 O_BomoASG10403_complete:A_BomoASG_c26292_g1_i1
139bp
449 O_BomoASG10404_3prime_partial:A_BomoASG_c26292_g1_i3
468bp
 uncharacterized_protein_LOC101743413_isoform_X3_[Bombyx_mori]
450 O_BomoASG10405_complete:A_BomoASG_c26292_g1_i3
139bp
previous next from show/32479

- SilkBase 1999-2023 -