Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2761	O_BomoASG12486_complete:A_BomoASG_c27626_g1_i1 157bp	Bomo_Chr17	unnamed_protein_product_[Oncorhynchus_mykiss]	GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0006310 P DNA recombination GO:0006313 P transposition, DNA-mediated GO:0015074 P DNA integration GO:0016787 F hydrolase activity GO:0032502 P developmental process GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2762	O_BomoASG12487_complete:A_BomoASG_c27626_g1_i1 139bp	Bomo_Chr17
2763	O_BomoASG12488_5prime_partial:A_BomoASG_c27627_g1_i1 293bp	Bomo_Chr11	RNA-binding_protein_40_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000398 P mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005689 C U12-type spliceosomal complex GO:0030626 F U12 snRNA binding GO:0032502 P developmental process GO:0097157 F pre-mRNA intronic binding
2764	O_BomoASG12489_5prime_partial:A_BomoASG_c27629_g1_i1 223bp	Bomo_Chr17	TM2_domain-containing_protein_CG10795_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process GO:0016020 C membrane GO:0016021 C integral component of membrane
2765	O_BomoASG1248_internal:A_BomoASG_c7469_g1_i1 150bp	Bomo_Chr21	chondroitin_sulfate_synthase_1_[Bombyx_mori]	GO:0002063 P chondrocyte development GO:0005576 C extracellular region GO:0005794 C Golgi apparatus GO:0008376 F acetylgalactosaminyltransferase activity GO:0009954 P proximal/distal pattern formation GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0030206 P chondroitin sulfate biosynthetic process GO:0030279 P negative regulation of ossification GO:0031667 P response to nutrient levels GO:0032580 C Golgi cisterna membrane GO:0045880 P positive regulation of smoothened signaling pathway GO:0046872 F metal ion binding GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity GO:0051216 P cartilage development GO:0051923 P sulfation GO:0060349 P bone morphogenesis
2766	O_BomoASG12490_5prime_partial:A_BomoASG_c27634_g1_i1 125bp	Bomo_Chr16
2767	O_BomoASG12491_5prime_partial:A_BomoASG_c27634_g1_i1 110bp	Bomo_Chr16	microprocessor_complex_subunit_DGCR8_[Bombyx_mori]	GO:0003723 F RNA binding GO:0003725 F double-stranded RNA binding GO:0004525 F ribonuclease III activity GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0015630 C microtubule cytoskeleton GO:0020037 F heme binding GO:0031053 P primary miRNA processing GO:0042803 F protein homodimerization activity GO:0046872 F metal ion binding GO:0070877 C microprocessor complex GO:0070878 F primary miRNA binding GO:0072091 P regulation of stem cell proliferation GO:0090501 P RNA phosphodiester bond hydrolysis GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2768	O_BomoASG12492_complete:A_BomoASG_c27634_g1_i1 109bp	Bomo_Chr16
2769	O_BomoASG12493_5prime_partial:A_BomoASG_c27636_g1_i1 283bp	Bomo_Chr5	glucose-6-phosphate_1-epimerase_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005975 P carbohydrate metabolic process GO:0016853 F isomerase activity GO:0030246 F carbohydrate binding GO:0044262 P cellular carbohydrate metabolic process GO:0047938 F glucose-6-phosphate 1-epimerase activity
2770	O_BomoASG12494_3prime_partial:A_BomoASG_c27637_g1_i2 315bp	Bomo_Chr19	PREDICTED:_uncharacterized_protein_LOC106711187_[Papilio_machaon]
2771	O_BomoASG12495_complete:A_BomoASG_c27646_g1_i1 225bp	Bomo_Chr13	hypothetical_protein_EAI_04162_[Harpegnathos_saltator]
2772	O_BomoASG12496_internal:A_BomoASG_c27648_g1_i1 222bp	Bomo_Scaf007	transmembrane_protein_94_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005654 C nucleoplasm GO:0008150 P biological_process GO:0016020 C membrane GO:0016021 C integral component of membrane
2773	O_BomoASG12497_3prime_partial:A_BomoASG_c27649_g1_i1 546bp	Bomo_Chr24	zinc_finger_protein_99_isoform_X2_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000278 P mitotic cell cycle GO:0000976 F transcription cis-regulatory region binding GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008168 F methyltransferase activity GO:0016568 P chromatin organization GO:0016575 P histone deacetylation GO:0016740 F transferase activity GO:0032259 P methylation GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0045892 P negative regulation of transcription, DNA-templated GO:0046872 F metal ion binding GO:0051567 P histone H3-K9 methylation GO:0070491 F DNA-binding transcription factor binding
2774	O_BomoASG12498_complete:A_BomoASG_c27649_g1_i1 105bp	Bomo_Chr24
2775	O_BomoASG12499_complete:A_BomoASG_c27650_g1_i1 150bp	Bomo_Chr15	uncharacterized_protein_LOC101739462_[Bombyx_mori]
2776	O_BomoASG1249_internal:A_BomoASG_c7480_g1_i1 166bp	Bomo_Chr5	PREDICTED:_neuronal_acetylcholine_receptor_subunit_alpha-7-like_isoform_X2_[Papilio_machaon]	GO:0004889 F acetylcholine-gated cation-selective channel activity GO:0005216 F ion channel activity GO:0005230 F extracellular ligand-gated ion channel activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005886 C plasma membrane GO:0005892 C acetylcholine-gated channel complex GO:0006810 P transport GO:0006811 P ion transport GO:0006816 P calcium ion transport GO:0007165 P signal transduction GO:0007271 P synaptic transmission, cholinergic GO:0008144 F obsolete drug binding GO:0008179 F adenylate cyclase binding GO:0014069 C postsynaptic density GO:0015464 F acetylcholine receptor activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0019228 P neuronal action potential GO:0019901 F protein kinase binding GO:0030054 C cell junction GO:0030424 C axon GO:0030425 C dendrite GO:0030426 C growth cone GO:0032279 C asymmetric synapse GO:0034220 P ion transmembrane transport GO:0042166 F acetylcholine binding GO:0042391 P regulation of membrane potential GO:0042416 P dopamine biosynthetic process GO:0042734 C presynaptic membrane GO:0043025 C neuronal cell body GO:0043197 C dendritic spine GO:0043198 C dendritic shaft GO:0045121 C membrane raft GO:0045202 C synapse GO:0045211 C postsynaptic membrane GO:0051117 F ATPase binding GO:0097110 F scaffold protein binding GO:0098655 P cation transmembrane transport GO:0099565 P chemical synaptic transmission, postsynaptic
2777	O_BomoASG124_internal:A_BomoASG_c828_g1_i1 104bp	Bomo_Chr9
2778	O_BomoASG12500_3prime_partial:A_BomoASG_c27651_g1_i1 411bp	Bomo_Chr1	facilitated_trehalose_transporter_Tret1-like_isoform_X3_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015767 P lactose transport GO:0015768 P maltose transport GO:0015770 P sucrose transport GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
2779	O_BomoASG12501_5prime_partial:A_BomoASG_c27651_g1_i1 123bp	Bomo_Chr1
2780	O_BomoASG12502_complete:A_BomoASG_c27651_g1_i2 148bp	Bomo_Chr1	facilitated_trehalose_transporter_Tret1-like_isoform_X4_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005351 F carbohydrate:proton symporter activity GO:0005355 F glucose transmembrane transporter activity GO:0005774 C vacuolar membrane GO:0005794 C Golgi apparatus GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0009705 C plant-type vacuole membrane GO:0010030 P positive regulation of seed germination GO:0015992 P proton transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0035428 P hexose transmembrane transport GO:0042593 P glucose homeostasis GO:0046323 P glucose import GO:0055085 P transmembrane transport GO:1904659 P glucose transmembrane transport
2781	O_BomoASG12503_5prime_partial:A_BomoASG_c27651_g1_i2 123bp	Bomo_Chr1
2782	O_BomoASG12504_3prime_partial:A_BomoASG_c27651_g1_i3 542bp	Bomo_Chr1	facilitated_trehalose_transporter_Tret1-like_isoform_X3_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015767 P lactose transport GO:0015768 P maltose transport GO:0015770 P sucrose transport GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
2783	O_BomoASG12505_5prime_partial:A_BomoASG_c27651_g1_i3 123bp	Bomo_Chr1
2784	O_BomoASG12506_3prime_partial:A_BomoASG_c27651_g1_i4 140bp	Bomo_Chr1	facilitated_trehalose_transporter_Tret1-like_isoform_X4_[Bombyx_mori]	GO:0005215 F transporter activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015574 F trehalose transmembrane transporter activity GO:0015771 P trehalose transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
2785	O_BomoASG12507_5prime_partial:A_BomoASG_c27652_g1_i1 1068bp	Bomo_Chr4	PREDICTED:_maestro_heat-like_repeat-containing_protein_family_member_1_[Amyelois_transitella]
2786	O_BomoASG12508_complete:A_BomoASG_c27652_g1_i1 123bp	Bomo_Chr4
2787	O_BomoASG12509_complete:A_BomoASG_c27652_g1_i2 1652bp	Bomo_Chr4	maestro_heat-like_repeat-containing_protein_family_member_1_isoform_X2_[Bombyx_mori]
2788	O_BomoASG1250_internal:A_BomoASG_c7486_g1_i1 184bp	Bomo_Chr8	uncharacterized_protein_LOC101737699_isoform_X2_[Bombyx_mori]
2789	O_BomoASG12510_complete:A_BomoASG_c27652_g1_i2 123bp	Bomo_Chr4
2790	O_BomoASG12511_complete:A_BomoASG_c27653_g1_i1 115bp	Bomo_Chr13	ionotropic_GABA_receptor_subunit_[Bombyx_mori]	GO:0004890 F GABA-A receptor activity GO:0005230 F extracellular ligand-gated ion channel activity GO:0005254 F chloride channel activity GO:0005261 F cation channel activity GO:0005886 C plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006821 P chloride transport GO:0007165 P signal transduction GO:0015276 F ligand-gated ion channel activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016933 F extracellularly glycine-gated ion channel activity GO:0030054 C cell junction GO:0034220 P ion transmembrane transport GO:0034707 C chloride channel complex GO:0045202 C synapse GO:0045211 C postsynaptic membrane GO:0098655 P cation transmembrane transport GO:1902476 P chloride transmembrane transport