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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1291 O_BomoASG11162_internal:A_BomoASG_c26810_g2_i1
190bp
 endothelial_zinc_finger_protein_induced_by_tumor_necrosis_factor_alpha-like_[Bombyx_mori]
1292 O_BomoASG11163_5prime_partial:A_BomoASG_c26811_g1_i1
397bp
 tetratricopeptide_repeat_protein_37_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0035327 C euchromatin
GO:0055087 C Ski complex
1293 O_BomoASG11164_5prime_partial:A_BomoASG_c26812_g1_i1
356bp
 HAUS_augmin-like_complex_subunit_3_[Bombyx_mori]
1294 O_BomoASG11165_5prime_partial:A_BomoASG_c26813_g1_i1
111bp
1295 O_BomoASG11166_5prime_partial:A_BomoASG_c26814_g1_i3
100bp
 metallo-beta-lactamase_domain-containing_protein_1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1296 O_BomoASG11167_complete:A_BomoASG_c26814_g1_i4
211bp
 metallo-beta-lactamase_domain-containing_protein_1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1297 O_BomoASG11168_3prime_partial:A_BomoASG_c26816_g1_i1
201bp
 E2F_transcription_factor_1_[Bombyx_mori]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0051726 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1990086 P lens fiber cell apoptotic process
1298 O_BomoASG11169_3prime_partial:A_BomoASG_c26816_g1_i2
201bp
 E2F_transcription_factor_1_[Bombyx_mori]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0051726 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1990086 P lens fiber cell apoptotic process
1299 O_BomoASG1116_internal:A_BomoASG_c6595_g1_i1
244bp
 alpha-N-acetylgalactosaminidase_precursor_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004557 F alpha-galactosidase activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0008456 F alpha-N-acetylgalactosaminidase activity
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
1300 O_BomoASG11170_complete:A_BomoASG_c26817_g1_i1
265bp
 negative_elongation_factor_E_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0008023 C transcription elongation factor complex
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0032021 C NELF complex
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
1301 O_BomoASG11171_complete:A_BomoASG_c26818_g1_i1
914bp
 uncharacterized_protein_LOC101739643_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010571 P positive regulation of nuclear cell cycle DNA replication
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0031297 P replication fork processing
GO:0031933 C obsolete telomeric heterochromatin
GO:0032206 P positive regulation of telomere maintenance
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0070603 C SWI/SNF superfamily-type complex
GO:0072711 P cellular response to hydroxyurea
GO:1901581 P negative regulation of telomeric RNA transcription from RNA pol II promoter
1302 O_BomoASG11172_complete:A_BomoASG_c26818_g1_i1
184bp
1303 O_BomoASG11173_complete:A_BomoASG_c26818_g1_i1
125bp
1304 O_BomoASG11174_3prime_partial:A_BomoASG_c26822_g1_i1
158bp
 UPF0692_protein_CG33108_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1305 O_BomoASG11175_3prime_partial:A_BomoASG_c26822_g1_i2
281bp
 UPF0692_protein_CG33108_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1306 O_BomoASG11176_internal:A_BomoASG_c26822_g1_i3
119bp
 UPF0692_protein_CG33108_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1307 O_BomoASG11177_complete:A_BomoASG_c26823_g1_i1
492bp
 DNA-directed_RNA_polymerase_III_subunit_RPC5_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0045087 P innate immune response
GO:0051607 P defense response to virus
1308 O_BomoASG11178_complete:A_BomoASG_c26823_g1_i1
103bp
1309 O_BomoASG11179_3prime_partial:A_BomoASG_c26826_g1_i2
268bp
 transport_and_Golgi_organization_protein_2_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007030 P Golgi organization
GO:0009306 P protein secretion
1310 O_BomoASG1117_5prime_partial:A_BomoASG_c6595_g1_i1
108bp
1311 O_BomoASG11180_5prime_partial:A_BomoASG_c26827_g1_i1
546bp
 probable_ATP-citrate_synthase_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003878 F ATP citrate synthase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006084 P acetyl-CoA metabolic process
GO:0006085 P acetyl-CoA biosynthetic process
GO:0006101 P citrate metabolic process
GO:0006107 P oxaloacetate metabolic process
GO:0006629 P lipid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0031325 P positive regulation of cellular metabolic process
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0046872 F metal ion binding
GO:0046912 F acyltransferase, acyl groups converted into alkyl on transfer
GO:0048037 F obsolete cofactor binding
GO:0070062 C extracellular exosome
1312 O_BomoASG11181_complete:A_BomoASG_c26827_g1_i1
101bp
1313 O_BomoASG11182_complete:A_BomoASG_c26827_g1_i2
1088bp
 PREDICTED:_ATP-citrate_synthase_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003878 F ATP citrate synthase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0006085 P acetyl-CoA biosynthetic process
GO:0006101 P citrate metabolic process
GO:0006107 P oxaloacetate metabolic process
GO:0006629 P lipid metabolic process
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
GO:0046912 F acyltransferase, acyl groups converted into alkyl on transfer
GO:0048037 F obsolete cofactor binding
GO:0070062 C extracellular exosome
1314 O_BomoASG11183_complete:A_BomoASG_c26827_g1_i2
179bp
GO:0003824 F catalytic activity
GO:0003866 F 3-phosphoshikimate 1-carboxyvinyltransferase activity
GO:0005737 C cytoplasm
GO:0008652 P cellular amino acid biosynthetic process
GO:0009073 P aromatic amino acid family biosynthetic process
GO:0009423 P chorismate biosynthetic process
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
1315 O_BomoASG11184_complete:A_BomoASG_c26827_g1_i2
145bp
1316 O_BomoASG11185_complete:A_BomoASG_c26827_g1_i2
131bp
1317 O_BomoASG11186_complete:A_BomoASG_c26827_g1_i2
101bp
1318 O_BomoASG11187_internal:A_BomoASG_c26828_g1_i1
306bp
 cuticular_protein_RR-2_motif_90_precursor_[Bombyx_mori]
1319 O_BomoASG11188_5prime_partial:A_BomoASG_c26828_g1_i1
135bp
1320 O_BomoASG11189_3prime_partial:A_BomoASG_c26831_g1_i1
118bp
 synembryn_[Bombyx_mori]
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