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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1231 O_BomoASG11108_complete:A_BomoASG_c26769_g2_i3
219bp
1232 O_BomoASG11109_5prime_partial:A_BomoASG_c26769_g2_i3
104bp
1233 O_BomoASG1110_internal:A_BomoASG_c6578_g1_i2
130bp
 tubulin_beta_chain_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
1234 O_BomoASG11110_internal:A_BomoASG_c26770_g1_i1
255bp
 Uncharacterized_protein_CG5098_[Papilio_xuthus]
1235 O_BomoASG11111_3prime_partial:A_BomoASG_c26770_g1_i1
111bp
1236 O_BomoASG11112_complete:A_BomoASG_c26772_g1_i1
591bp
 serine/threonine-protein_phosphatase_2A_65_kDa_regulatory_subunit_A_alpha_isoform_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
1237 O_BomoASG11113_complete:A_BomoASG_c26772_g1_i1
173bp
 NBS-LRR_type_resistance_protein_[Beta_vulgaris]
1238 O_BomoASG11114_3prime_partial:A_BomoASG_c26779_g1_i1
666bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1239 O_BomoASG11115_5prime_partial:A_BomoASG_c26779_g1_i1
278bp
1240 O_BomoASG11116_3prime_partial:A_BomoASG_c26779_g1_i1
248bp
1241 O_BomoASG11117_complete:A_BomoASG_c26779_g1_i2
588bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1242 O_BomoASG11118_3prime_partial:A_BomoASG_c26779_g1_i2
272bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
1243 O_BomoASG11119_5prime_partial:A_BomoASG_c26779_g1_i2
254bp
1244 O_BomoASG1111_complete:A_BomoASG_c6579_g1_i1
294bp
 ribonucleic_acid_binding_protein_S1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1245 O_BomoASG11120_3prime_partial:A_BomoASG_c26779_g1_i2
224bp
1246 O_BomoASG11121_5prime_partial:A_BomoASG_c26781_g1_i1
517bp
 PHD_finger_protein_rhinoceros_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0042051 P compound eye photoreceptor development
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
1247 O_BomoASG11122_5prime_partial:A_BomoASG_c26783_g2_i1
108bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1248 O_BomoASG11123_5prime_partial:A_BomoASG_c26783_g2_i2
119bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1249 O_BomoASG11124_complete:A_BomoASG_c26785_g2_i1
303bp
 methionine_aminopeptidase_1D,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1250 O_BomoASG11125_complete:A_BomoASG_c26785_g2_i2
303bp
 methionine_aminopeptidase_1D,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1251 O_BomoASG11126_complete:A_BomoASG_c26785_g2_i3
303bp
 methionine_aminopeptidase_1D,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1252 O_BomoASG11127_complete:A_BomoASG_c26786_g1_i1
749bp
 putative_RNA-binding_protein_15B_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
1253 O_BomoASG11128_complete:A_BomoASG_c26786_g1_i1
107bp
1254 O_BomoASG11129_complete:A_BomoASG_c26786_g1_i1
102bp
1255 O_BomoASG1112_complete:A_BomoASG_c6579_g1_i1
168bp
1256 O_BomoASG11130_5prime_partial:A_BomoASG_c26787_g1_i1
196bp
 ORF1_[Bombyx_mori]
GO:0046872 F metal ion binding
1257 O_BomoASG11131_complete:A_BomoASG_c26788_g1_i2
342bp
 uncharacterized_protein_LOC101741377_isoform_X1_[Bombyx_mori]
1258 O_BomoASG11132_complete:A_BomoASG_c26788_g1_i2
223bp
1259 O_BomoASG11133_internal:A_BomoASG_c26789_g1_i1
150bp
 PREDICTED:_coronin-7_[Papilio_polytes]
GO:0000139 C Golgi membrane
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006895 P Golgi to endosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030041 P actin filament polymerization
GO:0031410 C cytoplasmic vesicle
1260 O_BomoASG11134_5prime_partial:A_BomoASG_c26789_g1_i1
130bp
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