SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10441 O_BomoASG19399_internal:A_BomoASG_c30549_g1_i4
588bp
 ral_GTPase-activating_protein_subunit_beta_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0046982 F protein heterodimerization activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0090630 P activation of GTPase activity
10442 O_BomoASG1939_5prime_partial:A_BomoASG_c12271_g1_i1
227bp
10443 O_BomoASG193_3prime_partial:A_BomoASG_c1583_g1_i1
148bp
 ralA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
10444 O_BomoASG19400_5prime_partial:A_BomoASG_c30549_g1_i4
151bp
10445 O_BomoASG19401_complete:A_BomoASG_c30549_g1_i4
127bp
10446 O_BomoASG19402_5prime_partial:A_BomoASG_c30549_g1_i4
111bp
10447 O_BomoASG19403_3prime_partial:A_BomoASG_c30549_g1_i4
106bp
10448 O_BomoASG19404_complete:A_BomoASG_c30550_g1_i1
1056bp
 zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10449 O_BomoASG19405_complete:A_BomoASG_c30550_g1_i1
178bp
10450 O_BomoASG19406_complete:A_BomoASG_c30550_g1_i1
119bp
10451 O_BomoASG19407_5prime_partial:A_BomoASG_c30550_g1_i2
940bp
 zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10452 O_BomoASG19408_complete:A_BomoASG_c30550_g1_i2
178bp
10453 O_BomoASG19409_complete:A_BomoASG_c30550_g1_i2
119bp
10454 O_BomoASG1940_5prime_partial:A_BomoASG_c12271_g1_i1
164bp
10455 O_BomoASG19410_complete:A_BomoASG_c30552_g1_i1
179bp
 zinc_finger_CCCH_domain-containing_protein_11A_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
10456 O_BomoASG19411_5prime_partial:A_BomoASG_c30553_g1_i2
218bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
10457 O_BomoASG19412_5prime_partial:A_BomoASG_c30555_g1_i3
431bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0046872 F metal ion binding
10458 O_BomoASG19413_complete:A_BomoASG_c30555_g1_i5
693bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
10459 O_BomoASG19414_complete:A_BomoASG_c30555_g1_i5
135bp
10460 O_BomoASG19415_complete:A_BomoASG_c30555_g1_i6
693bp
 RNA-binding_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0046872 F metal ion binding
10461 O_BomoASG19416_3prime_partial:A_BomoASG_c30556_g1_i1
187bp
10462 O_BomoASG19417_complete:A_BomoASG_c30556_g1_i1
142bp
 PREDICTED:_protein_phosphatase_1_regulatory_subunit_11-like_[Amyelois_transitella]
GO:0000164 C protein phosphatase type 1 complex
GO:0004864 F protein phosphatase inhibitor activity
GO:0004865 F protein serine/threonine phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0032515 P negative regulation of phosphoprotein phosphatase activity
10463 O_BomoASG19418_complete:A_BomoASG_c30556_g2_i7
734bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
10464 O_BomoASG19419_complete:A_BomoASG_c30556_g2_i7
107bp
10465 O_BomoASG1941_5prime_partial:A_BomoASG_c12272_g1_i1
257bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
10466 O_BomoASG19420_3prime_partial:A_BomoASG_c30557_g1_i1
461bp
 eIF-2-alpha_kinase_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
10467 O_BomoASG19421_5prime_partial:A_BomoASG_c30557_g1_i1
200bp
10468 O_BomoASG19422_5prime_partial:A_BomoASG_c30557_g1_i1
171bp
10469 O_BomoASG19423_complete:A_BomoASG_c30558_g1_i2
427bp
 uncharacterized_protein_LOC101738523_[Bombyx_mori]
GO:0005515 F protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
10470 O_BomoASG19424_complete:A_BomoASG_c30558_g1_i2
177bp
previous next from show/32479

- SilkBase 1999-2023 -