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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10231 O_BomoASG19209_complete:A_BomoASG_c30472_g1_i1
115bp
10232 O_BomoASG1920_complete:A_BomoASG_c12259_g1_i1
223bp
 elongation_factor_1-beta'_[Bombyx_mori]
GO:0003746 F translation elongation factor activity
GO:0005853 C eukaryotic translation elongation factor 1 complex
GO:0006412 P translation
GO:0006414 P translational elongation
10233 O_BomoASG19210_5prime_partial:A_BomoASG_c30472_g1_i1
107bp
10234 O_BomoASG19211_3prime_partial:A_BomoASG_c30473_g1_i1
556bp
 CDT1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0007049 P cell cycle
10235 O_BomoASG19212_3prime_partial:A_BomoASG_c30474_g1_i1
372bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10236 O_BomoASG19213_internal:A_BomoASG_c30474_g1_i2
310bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10237 O_BomoASG19214_3prime_partial:A_BomoASG_c30474_g1_i3
372bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10238 O_BomoASG19215_internal:A_BomoASG_c30474_g1_i4
260bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10239 O_BomoASG19216_internal:A_BomoASG_c30474_g1_i5
253bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
10240 O_BomoASG19217_complete:A_BomoASG_c30475_g1_i1
1728bp
 transcription_elongation_factor_SPT6_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
10241 O_BomoASG19218_complete:A_BomoASG_c30475_g1_i1
206bp
10242 O_BomoASG19219_complete:A_BomoASG_c30475_g1_i1
123bp
10243 O_BomoASG1921_5prime_partial:A_BomoASG_c12259_g1_i1
147bp
10244 O_BomoASG19220_complete:A_BomoASG_c30475_g1_i1
121bp
10245 O_BomoASG19221_internal:A_BomoASG_c30478_g1_i1
99bp
 acetyl-coenzyme_A_transporter_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007417 P central nervous system development
GO:0008521 F acetyl-CoA transmembrane transporter activity
GO:0015295 F solute:proton symporter activity
GO:0015876 P acetyl-CoA transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030509 P BMP signaling pathway
GO:0060395 P SMAD protein signal transduction
10246 O_BomoASG19222_3prime_partial:A_BomoASG_c30478_g1_i2
445bp
 acetyl-coenzyme_A_transporter_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007417 P central nervous system development
GO:0008521 F acetyl-CoA transmembrane transporter activity
GO:0015295 F solute:proton symporter activity
GO:0015876 P acetyl-CoA transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030509 P BMP signaling pathway
GO:0060395 P SMAD protein signal transduction
10247 O_BomoASG19223_complete:A_BomoASG_c30478_g1_i2
263bp
 hypothetical_protein_AX774_g1530_[Zancudomyces_culisetae]
10248 O_BomoASG19224_3prime_partial:A_BomoASG_c30478_g1_i3
445bp
 acetyl-coenzyme_A_transporter_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007417 P central nervous system development
GO:0008521 F acetyl-CoA transmembrane transporter activity
GO:0015295 F solute:proton symporter activity
GO:0015876 P acetyl-CoA transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030509 P BMP signaling pathway
GO:0060395 P SMAD protein signal transduction
10249 O_BomoASG19225_3prime_partial:A_BomoASG_c30478_g1_i3
256bp
 hypothetical_protein_AX774_g1530_[Zancudomyces_culisetae]
10250 O_BomoASG19226_3prime_partial:A_BomoASG_c30479_g1_i2
319bp
 pre-mRNA-splicing_factor_18_[Bombyx_mori]
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071021 C U2-type post-spliceosomal complex
GO:0071048 P nuclear mRNA surveillance
10251 O_BomoASG19227_internal:A_BomoASG_c30480_g1_i1
580bp
 small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
10252 O_BomoASG19228_complete:A_BomoASG_c30480_g1_i1
135bp
10253 O_BomoASG19229_internal:A_BomoASG_c30480_g1_i2
451bp
 small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
10254 O_BomoASG1922_complete:A_BomoASG_c12259_g1_i1
119bp
 25_kDa_translation_elongation_factor_1-beta_[Trypanosoma_rangeli]
10255 O_BomoASG19230_3prime_partial:A_BomoASG_c30480_g1_i2
139bp
10256 O_BomoASG19231_5prime_partial:A_BomoASG_c30481_g1_i1
115bp
 uncharacterized_protein_LOC101735393_[Bombyx_mori]
10257 O_BomoASG19232_3prime_partial:A_BomoASG_c30481_g1_i1
104bp
10258 O_BomoASG19233_complete:A_BomoASG_c30482_g1_i1
334bp
 methylosome_protein_50_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0008327 F methyl-CpG binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0030374 F nuclear receptor coactivator activity
GO:0034709 C methylosome
GO:0035246 P peptidyl-arginine N-methylation
GO:0060528 P secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
GO:0060770 P negative regulation of epithelial cell proliferation involved in prostate gland development
10259 O_BomoASG19234_complete:A_BomoASG_c30482_g1_i2
213bp
 methylosome_protein_50_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0008327 F methyl-CpG binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0030374 F nuclear receptor coactivator activity
GO:0034709 C methylosome
GO:0035246 P peptidyl-arginine N-methylation
GO:0060528 P secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
GO:0060770 P negative regulation of epithelial cell proliferation involved in prostate gland development
10260 O_BomoASG19235_3prime_partial:A_BomoASG_c30485_g1_i1
456bp
 peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005782 C peroxisomal matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016402 F pristanoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
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