SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/15605
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2581 O_TrvaMG14440_complete:A_TrvaMG_comp26844_c0_seq4
234bp
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
2582 O_TrvaMG14442_complete:A_TrvaMG_comp26845_c1_seq1
1896bp
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000706 P meiotic DNA double-strand break processing
GO:0000723 P telomere maintenance
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007015 P actin filament organization
GO:0007088 P regulation of mitotic nuclear division
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0007275 P multicellular organism development
GO:0007348 P regulation of syncytial blastoderm mitotic cell cycle
GO:0007349 P cellularization
GO:0007444 P imaginal disc development
GO:0008360 P regulation of cell shape
GO:0009314 P response to radiation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016321 P female meiosis chromosome segregation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0030261 P chromosome condensation
GO:0031000 P response to caffeine
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0045002 P double-strand break repair via single-strand annealing
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:0048477 P oogenesis
2583 O_TrvaMG14443_complete:A_TrvaMG_comp26846_c0_seq1
1226bp
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007339 P binding of sperm to zona pellucida
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0050840 F extracellular matrix binding
GO:2000359 P regulation of binding of sperm to zona pellucida
2584 O_TrvaMG14446_complete:A_TrvaMG_comp26846_c0_seq2
1377bp
2585 O_TrvaMG14449_complete:A_TrvaMG_comp26846_c0_seq3
1783bp
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006469 P negative regulation of protein kinase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0035690 P cellular response to xenobiotic stimulus
GO:0035970 P peptidyl-threonine dephosphorylation
GO:0043169 F cation binding
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0051496 P positive regulation of stress fiber assembly
2586 O_TrvaMG1444_complete:A_TrvaMG_comp13425_c0_seq1
501bp
PREDICTED:_fumarate_hydratase,_mitochondrial-like_[Amyelois_transitella]
GO:0003824 F catalytic activity
GO:0004333 F fumarate hydratase activity
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006099 P tricarboxylic acid cycle
GO:0006106 P fumarate metabolic process
GO:0006108 P malate metabolic process
GO:0016829 F lyase activity
GO:0045239 C tricarboxylic acid cycle enzyme complex
GO:0051262 P protein tetramerization
2587 O_TrvaMG14452_complete:A_TrvaMG_comp26846_c0_seq4
1783bp
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006469 P negative regulation of protein kinase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0035690 P cellular response to xenobiotic stimulus
GO:0035970 P peptidyl-threonine dephosphorylation
GO:0043169 F cation binding
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0051496 P positive regulation of stress fiber assembly
2588 O_TrvaMG14455_complete:A_TrvaMG_comp26846_c0_seq5
1377bp
2589 O_TrvaMG14458_complete:A_TrvaMG_comp26846_c0_seq6
1226bp
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007339 P binding of sperm to zona pellucida
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0050840 F extracellular matrix binding
GO:2000359 P regulation of binding of sperm to zona pellucida
2590 O_TrvaMG1445_complete:A_TrvaMG_comp13425_c0_seq2
368bp
N-methyltryptophan_oxidase_[Serratia_plymuthica]
GO:0005829 C cytosol
GO:0006974 P cellular response to DNA damage stimulus
GO:0016491 F oxidoreductase activity
GO:0016647 F oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor
GO:0050131 F N-methyl-L-amino-acid oxidase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
2591 O_TrvaMG14461_complete:A_TrvaMG_comp26847_c0_seq1
816bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0071004 C U2-type prespliceosome
2592 O_TrvaMG14464_complete:A_TrvaMG_comp26847_c0_seq2
786bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0071004 C U2-type prespliceosome
2593 O_TrvaMG14466_internal:A_TrvaMG_comp26848_c0_seq1
103bp
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
2594 O_TrvaMG14467_internal:A_TrvaMG_comp26848_c0_seq2
237bp
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
2595 O_TrvaMG14468_5prime_partial:A_TrvaMG_comp26848_c1_seq1
500bp
GO:0001520 C outer dense fiber
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008150 P biological_process
GO:0030154 P cell differentiation
2596 O_TrvaMG1446_complete:A_TrvaMG_comp13427_c0_seq1
482bp
PREDICTED:_alanine--glyoxylate_aminotransferase_2-like_[Papilio_machaon]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008453 F alanine-glyoxylate transaminase activity
GO:0008483 F transaminase activity
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0030170 F pyridoxal phosphate binding
GO:0035094 P response to nicotine
GO:0042802 F identical protein binding
2597 O_TrvaMG14470_complete:A_TrvaMG_comp26849_c0_seq1
1236bp
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0070062 C extracellular exosome
2598 O_TrvaMG14471_complete:A_TrvaMG_comp26849_c0_seq3
1175bp
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0070062 C extracellular exosome
2599 O_TrvaMG14472_complete:A_TrvaMG_comp26850_c1_seq1
1001bp
GO:0003677 F DNA binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0043086 P negative regulation of catalytic activity
GO:0046872 F metal ion binding
2600 O_TrvaMG14476_3prime_partial:A_TrvaMG_comp26850_c1_seq2
580bp
GO:0003677 F DNA binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0043086 P negative regulation of catalytic activity
GO:0046872 F metal ion binding
2601 O_TrvaMG14479_complete:A_TrvaMG_comp26851_c0_seq1
162bp
GO:0000275 C mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005743 C mitochondrial inner membrane
GO:0005753 C mitochondrial proton-transporting ATP synthase complex
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045259 C proton-transporting ATP synthase complex
GO:0045261 C proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
2602 O_TrvaMG14480_complete:A_TrvaMG_comp26853_c0_seq2
1377bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0097120 P receptor localization to synapse
2603 O_TrvaMG14482_complete:A_TrvaMG_comp26853_c0_seq3
1395bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046875 F ephrin receptor binding
2604 O_TrvaMG14484_complete:A_TrvaMG_comp26854_c0_seq1
208bp
2605 O_TrvaMG14485_complete:A_TrvaMG_comp26854_c0_seq2
208bp
2606 O_TrvaMG14486_complete:A_TrvaMG_comp26855_c0_seq1
1007bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2607 O_TrvaMG14487_3prime_partial:A_TrvaMG_comp26855_c0_seq1
284bp
2608 O_TrvaMG1448_complete:A_TrvaMG_comp13427_c0_seq2
335bp
PREDICTED:_alanine--glyoxylate_aminotransferase_2-like_[Papilio_machaon]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008453 F alanine-glyoxylate transaminase activity
GO:0008483 F transaminase activity
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0030170 F pyridoxal phosphate binding
GO:0035094 P response to nicotine
GO:0042802 F identical protein binding
2609 O_TrvaMG14490_complete:A_TrvaMG_comp26855_c0_seq2
1007bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2610 O_TrvaMG14491_3prime_partial:A_TrvaMG_comp26855_c0_seq2
284bp
previous next from show/15605

- SilkBase 1999-2023 -